BYSL
Bystin
Also known as: BYST_HUMAN, Enp1
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q13895
- Gene
- BYSL
- Ensembl
- ENSG00000112578
- Chromosome
- 6
- Canonical length
- 437 aa
- Protein class
- Predicted intracellular proteins
- Subcellular location
- Nucleoplasm,Nucleoli,Nucleoli rim,Mitotic chromosome
OverviewNCBI Gene
Bystin is expressed as a 2-kb major transcript and a 3.6-kb minor transcript in SNG-M cells and in human trophoblastic teratocarcinoma HT-H cells. Protein binding assays determined that bystin binds directly to trophinin and tastin, and that binding is enhanced when cytokeratins 8 and 18 are present. Immunocytochemistry of HT-H cells showed that bystin colocalizes with trophinin, tastin, and the cytokeratins, suggesting that these molecules form a complex in trophectoderm cells at the time of implantation. Using immunohistochemistry it was determined that trophinin and bystin are found in the placenta from the sixth week of pregnancy. Both proteins were localized in the cytoplasm of the syncytiotrophoblast in the chorionic villi and in endometrial decidual cells at the uteroplacental interface. After week 10, the levels of trophinin, tastin, and bystin decreased and then disappeared from placental villi. [provided by RefSeq, Jul 2008]
Canonical amino-acid sequenceUniProt
437 residues, UniProt reviewed canonical sequence.
>Q13895|BYSL
1 MPKFKAARGV GGQEKHAPLA DQILAGNAVR AGVREKRRGR GTGEAEEEYV GPRLSRRILQ
61 QARQQQEELE AEHGTGDKPA APRERTTRLG PRMPQDGSDD EDEEWPTLEK AATMTAAGHH
121 AEVVVDPEDE RAIEMFMNKN PPARRTLADI IMEKLTEKQT EVETVMSEVS GFPMPQLDPR
181 VLEVYRGVRE VLSKYRSGKL PKAFKIIPAL SNWEQILYVT EPEAWTAAAM YQATRIFASN
241 LKERMAQRFY NLVLLPRVRD DVAEYKRLNF HLYMALKKAL FKPGAWFKGI LIPLCESGTC
301 TLREAIIVGS IITKCSIPVL HSSAAMLKIA EMEYSGANSI FLRLLLDKKY ALPYRVLDAL
361 VFHFLGFRTE KRELPVLWHQ CLLTLVQRYK ADLATDQKEA LLELLRLQPH PQLSPEIRRE
421 LQSAVPRDVE DVPITVELocalizationUniProt · AlphaFold · HPA
Whether an antibody against BYSL can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.38
- Highest tissue expression
- 28 nTPM
Expression across tissuesHPA
Tissue
- skeletal muscle: 28 nTPM
- urinary bladder: 14 nTPM
- adrenal gland: 14 nTPM
- esophagus: 13 nTPM
- tonsil: 12 nTPM
- adipose tissue: 12 nTPM
Single-cell type
- oocytes: 60 nCPM
- esophageal basal cells: 42 nCPM
- epicardial cells: 36 nCPM
- decidual stromal cells: 33 nCPM
- differentiating spermatogonia: 32 nCPM
- migrating cytotrophoblasts: 30 nCPM
Immune cell
- plasmacytoid DC: 9.2 nTPM
- NK-cell: 6.1 nTPM
- myeloid DC: 6 nTPM
- MAIT T-cell: 5.9 nTPM
- naive B-cell: 5.6 nTPM
- gdT-cell: 4.3 nTPM
Brain region
- pons: 9 nTPM
- hypothalamus: 8.5 nTPM
- midbrain: 8.4 nTPM
- cerebral cortex: 7.2 nTPM
- white matter: 7.2 nTPM
- medulla oblongata: 7 nTPM
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.81
- gnomAD pLI
- 0
- gnomAD missense Z
- 0.49
- DepMap mean gene effect
- -1.37
- DepMap dependency class
- pan
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 9% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
- regulation of protein localization to nucleolus
- ribosome biogenesis
- rRNA processing
- stem cell proliferation
- trophectodermal cell differentiation
Molecular functions
Cellular components
Protein domainsUniProt · Pfam · InterPro
- Bystin
- Bystin
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of BYSL in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads BYSL as an antibody target. Whether an autoantibody or antibody against BYSL could matter depends on whether native BYSL is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
BYSL is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label BYSL as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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