RIPK1
Receptor-interacting serine/threonine-protein kinase 1
Also known as: RIP, RIP-1, RIP1, RIPK1_HUMAN
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q13546
- Gene
- RIPK1
- Ensembl
- ENSG00000137275
- Chromosome
- 6
- Canonical length
- 671 aa
- Protein class
- Disease related genes, Enzymes, Human disease related genes, Potential drug targets, Predicted intracellular proteins
- Subcellular location
- Plasma membrane,Cytosol
- Quaternary structure
- Homodimer
OverviewNCBI Gene
This gene encodes a member of the receptor-interacting protein (RIP) family of serine/threonine protein kinases. The encoded protein plays a role in inflammation and cell death in response to tissue damage, pathogen recognition, and as part of developmental regulation. RIPK1/RIPK3 kinase-mediated necrosis is referred to as necroptosis. Genetic disruption of this gene in mice results in death shortly after birth. [provided by RefSeq, Aug 2017]
Canonical amino-acid sequenceUniProt
671 residues, UniProt reviewed canonical sequence.
>Q13546|RIPK1
1 MQPDMSLNVI KMKSSDFLES AELDSGGFGK VSLCFHRTQG LMIMKTVYKG PNCIEHNEAL
61 LEEAKMMNRL RHSRVVKLLG VIIEEGKYSL VMEYMEKGNL MHVLKAEMST PLSVKGRIIL
121 EIIEGMCYLH GKGVIHKDLK PENILVDNDF HIKIADLGLA SFKMWSKLNN EEHNELREVD
181 GTAKKNGGTL YYMAPEHLND VNAKPTEKSD VYSFAVVLWA IFANKEPYEN AICEQQLIMC
241 IKSGNRPDVD DITEYCPREI ISLMKLCWEA NPEARPTFPG IEEKFRPFYL SQLEESVEED
301 VKSLKKEYSN ENAVVKRMQS LQLDCVAVPS SRSNSATEQP GSLHSSQGLG MGPVEESWFA
361 PSLEHPQEEN EPSLQSKLQD EANYHLYGSR MDRQTKQQPR QNVAYNREEE RRRRVSHDPF
421 AQQRPYENFQ NTEGKGTAYS SAASHGNAVH QPSGLTSQPQ VLYQNNGLYS SHGFGTRPLD
481 PGTAGPRVWY RPIPSHMPSL HNIPVPETNY LGNTPTMPFS SLPPTDESIK YTIYNSTGIQ
541 IGAYNYMEIG GTSSSLLDST NTNFKEEPAA KYQAIFDNTT SLTDKHLDPI RENLGKHWKN
601 CARKLGFTQS QIDEIDHDYE RDGLKEKVYQ MLQKWVMREG IKGATVGKLA QALHQCSRID
661 LLSSLIYVSQ NLocalizationUniProt · AlphaFold · HPA
Whether an antibody against RIPK1 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Cell surface
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.42
- Highest tissue expression
- 17 nTPM
Expression across tissuesHPA
Tissue
- liver: 17 nTPM
- urinary bladder: 13 nTPM
- small intestine: 13 nTPM
- rectum: 12 nTPM
- tonsil: 12 nTPM
- colon: 12 nTPM
Single-cell type
- enterocytes: 345 nCPM
- colonocytes: 310 nCPM
- rod photoreceptor cells: 247 nCPM
- neutrophils: 225 nCPM
- goblet cells: 186 nCPM
- breast myoepithelial cells: 149 nCPM
Immune cell
- memory CD8 T-cell: 1.7 nTPM
- T-reg: 1.7 nTPM
- NK-cell: 1.5 nTPM
- naive B-cell: 1.3 nTPM
- MAIT T-cell: 1 nTPM
- myeloid DC: 1 nTPM
Brain region
- choroid plexus: 2.4 nTPM
- medulla oblongata: 2.1 nTPM
- pons: 1.6 nTPM
- thalamus: 1.6 nTPM
- spinal cord: 1.5 nTPM
- basal ganglia: 1.4 nTPM
DiseaseUniProt · ClinVar · IEDB · PubMed
Four sources answering four different questions about RIPK1.
Disease | AllUniProt
Conditions RIPK1 is implicated in, by any mechanism.
- Immunodeficiency 57 with autoinflammation (IMD57) MIM:618108
- Autoinflammation with episodic fever and lymphadenopathy (AIEFL) MIM:618852
Disease | GeneticClinVar
25 pathogenic / likely-pathogenic of 580 ClinVar records.
Conditions with pathogenic or likely-pathogenic variants.
- Immunodeficiency 57
- Autoinflammation with episodic fever and lymphadenopathy
- IL10-related early-onset inflammatory bowel disease
- Inborn error of immunity
- Hereditary breast ovarian cancer syndrome
Disease | ImmuneIEDB
Conditions an epitope on RIPK1 was assayed in.
- narcolepsy B cell
- multiple sclerosis B cell
- peripheral nervous system disease B cell
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.55
- gnomAD pLI
- 0.01
- gnomAD missense Z
- 1.56
- DepMap mean gene effect
- -0.01
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 7% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- amyloid fibril formation
- apoptotic process
- canonical NF-kappaB signal transduction
- cellular response to growth factor stimulus
- cellular response to hydrogen peroxide
- cellular response to tumor necrosis factor
- extrinsic apoptotic signaling pathway
- inflammatory response
- intracellular signal transduction
- necroptotic process
- necroptotic signaling pathway
- negative regulation of apoptotic process
- negative regulation of canonical NF-kappaB signal transduction
- negative regulation of extrinsic apoptotic signaling pathway
- negative regulation of extrinsic apoptotic signaling pathway in absence of ligand
- negative regulation of necroptotic process
- peptidyl-serine autophosphorylation
- positive regulation of apoptotic process
- positive regulation of canonical NF-kappaB signal transduction
- positive regulation of execution phase of apoptosis
- positive regulation of extrinsic apoptotic signaling pathway
- positive regulation of gene expression
- positive regulation of inflammatory response
- positive regulation of interleukin-6-mediated signaling pathway
- positive regulation of interleukin-8 production
- positive regulation of JNK cascade
- positive regulation of macrophage differentiation
- positive regulation of necroptotic process
- positive regulation of neuron apoptotic process
- positive regulation of NF-kappaB transcription factor activity
- positive regulation of non-canonical NF-kappaB signal transduction
- positive regulation of programmed cell death
- positive regulation of programmed necrotic cell death
- positive regulation of protein phosphorylation
- positive regulation of reactive oxygen species metabolic process
- positive regulation of transcription by RNA polymerase II
- positive regulation of tumor necrosis factor production
- positive regulation of tumor necrosis factor-mediated signaling pathway
- programmed necrotic cell death
- protein autophosphorylation
- protein catabolic process
- response to oxidative stress
- response to tumor necrosis factor
- ripoptosome assembly involved in necroptotic process
- T cell apoptotic process
- tumor necrosis factor-mediated signaling pathway
- positive regulation of miRNA processing
- ripoptosome assembly
Molecular functions
- ATP binding
- death domain binding
- death receptor binding
- identical protein binding
- JUN kinase kinase kinase activity
- protein homodimerization activity
- protein kinase activity
- protein serine kinase activity
- protein serine/threonine kinase activity
- protein serine/threonine kinase binding
- protein-containing complex binding
- signaling adaptor activity
- ubiquitin protein ligase binding
Cellular components
Protein domainsUniProt · Pfam · InterPro
- Death domain
- Protein kinase domain
- Serine-threonine/tyrosine-protein kinase, catalytic domain
- Serine/threonine-protein kinase, active site
- Protein kinase-like domain superfamily
- Death-like domain superfamily
- Serine/Threonine Kinases and Pseudokinases
- Death domain
- Protein tyrosine and serine/threonine kinase
- RIP1, Death domain
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of RIPK1 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads RIPK1 as an antibody target. Whether an autoantibody or antibody against RIPK1 could matter depends on whether native RIPK1 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
RIPK1 is annotated at the cell surface, where native RIPK1 is exposed to circulating antibodies and is a prime autoantibody target that could block, deplete, or overstimulate it.
Annotation status
The present source text does not explicitly label RIPK1 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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