RING1
E3 ubiquitin-protein ligase RING1
Also known as: RING1_HUMAN, RNF1
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q06587
- Gene
- RING1
- Ensembl
- ENSG00000204227
- Chromosome
- 6
- Canonical length
- 406 aa
- Protein class
- Enzymes, Metabolic proteins, Predicted intracellular proteins
- Subcellular location
- Nucleoplasm,Cytosol
OverviewNCBI Gene
This gene belongs to the RING finger family, members of which encode proteins characterized by a RING domain, a zinc-binding motif related to the zinc finger domain. The gene product can bind DNA and can act as a transcriptional repressor. It is associated with the multimeric polycomb group protein complex. The gene product interacts with the polycomb group proteins BMI1, EDR1, and CBX4, and colocalizes with these proteins in large nuclear domains. It interacts with the CBX4 protein via its glycine-rich C-terminal domain. The gene maps to the HLA class II region, where it is contiguous with the RING finger genes FABGL and HKE4. [provided by RefSeq, Jul 2008]
Canonical amino-acid sequenceUniProt
406 residues, UniProt reviewed canonical sequence.
>Q06587|RING1
1 MTTPANAQNA SKTWELSLYE LHRTPQEAIM DGTEIAVSPR SLHSELMCPI CLDMLKNTMT
61 TKECLHRFCS DCIVTALRSG NKECPTCRKK LVSKRSLRPD PNFDALISKI YPSREEYEAH
121 QDRVLIRLSR LHNQQALSSS IEEGLRMQAM HRAQRVRRPI PGSDQTTTMS GGEGEPGEGE
181 GDGEDVSSDS APDSAPGPAP KRPRGGGAGG SSVGTGGGGT GGVGGGAGSE DSGDRGGTLG
241 GGTLGPPSPP GAPSPPEPGG EIELVFRPHP LLVEKGEYCQ TRYVKTTGNA TVDHLSKYLA
301 LRIALERRQQ QEAGEPGGPG GGASDTGGPD GCGGEGGGAG GGDGPEEPAL PSLEGVSEKQ
361 YTIYIAPGGG AFTTLNGSLT LELVNEKFWK VSRPLELCYA PTKDPKLocalizationUniProt · AlphaFold · HPA
Whether an antibody against RING1 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.53
- Highest tissue expression
- 76 nTPM
Expression across tissuesHPA
Tissue
- pituitary gland: 76 nTPM
- thyroid gland: 63 nTPM
- cerebellum: 60 nTPM
- ovary: 56 nTPM
- cervix: 55 nTPM
- prostate: 52 nTPM
Single-cell type
- bergmann glia: 50 nCPM
- astrocytes: 43 nCPM
- ependymal cells: 42 nCPM
- other brain neurons: 33 nCPM
- brain inhibitory neurons: 32 nCPM
- brain excitatory neurons: 31 nCPM
Immune cell
- eosinophil: 1.6 nTPM
- naive CD8 T-cell: 1.3 nTPM
- plasmacytoid DC: 1.2 nTPM
- T-reg: 0.9 nTPM
- memory B-cell: 0.8 nTPM
- MAIT T-cell: 0.6 nTPM
Brain region
- white matter: 29 nTPM
- cerebral cortex: 26 nTPM
- thalamus: 23 nTPM
- midbrain: 21 nTPM
- basal ganglia: 20 nTPM
- choroid plexus: 20 nTPM
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.47
- gnomAD pLI
- 0.65
- gnomAD missense Z
- 2.56
- DepMap mean gene effect
- -0.14
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 8% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- anterior/posterior pattern specification
- camera-type eye morphogenesis
- chromatin remodeling
- negative regulation of DNA-templated transcription
- protein ubiquitination
Molecular functions
- chromatin binding
- ubiquitin protein ligase activity
- ubiquitin-protein transferase activator activity
- zinc ion binding
Cellular components
Protein domainsUniProt · Pfam · InterPro
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of RING1 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads RING1 as an antibody target. Whether an autoantibody or antibody against RING1 could matter depends on whether native RING1 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
RING1 is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label RING1 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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