ANL, N-terminal domain
IPR042099
Definition
This superfamily comprises structural domains found at the N-terminal and middle positions of various ligases from the ANL superfamily. The name ANL derives from three of the subfamilies - Acyl-CoA synthetases, the adenylation domains of the modular non-ribosomal peptide synthetases (NRPSs), and the luciferase enzymes. Members of this superfamily include luciferase, long-chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely related synthetases, as well as a plant auxin-responsive promoter family. These enzymes are involved in catalysing the initial adenylation of a carboxylate to form an acyl-AMP intermediate, followed by a second partial reaction, most commonly the formation of a thioester. These adenylating enzymes utilise a 140-degree rotation of the C-terminal domain to adopt two distinct conformations that are used for the adenylation and thiolation reactions. Thus, by using two different conformations of the C-terminal domain, these enzymes perform two distinct steps of catalysis. Luciferases are composed of a large N-terminal domain and a smaller C-terminal domain, which form a cleft. The active site of these enzymes is located at the interface between these two domains, with most active site residues located in the N-terminal domain and two lysine residues in the C-terminal domain. The N-terminal domain is involved in catalysis, and the C-terminal domain is essential for luciferase activation during the catalytic reaction [[cite:PMID:24103420], [cite:PMID:22852753]]. The overall structure of the N-terminal domain has been characterised in a fatty acyl-CoA ligase in M. tuberculosis, FA and fatty acyl-AMP ligase FAAL28. The N-terminal domain of FA consists of three subdomains: subdomains A and B form α+β topology, which pack together to form a five-layered α-β-α-β-α tertiary structure. The third subdomain C folds into a distorted β-barrel topology. In FAAL28, the C-subdomain presents an insertion between β-strands 1 and 2. A hydrophobic interaction was identified at the interface of insertion and the N-terminal domain, and it was suggested to play a fundamental role in anchoring the insertion motif and arresting the acyl-CoA catalysis PMID:22206988. The Mycobacterium tuberculosis fatty acyl-CoA synthetase (ACS) FadD13 is a peripheral membrane protein essential for virulence and intracellular growth of the pathogen. FadD13 was identified to play a central role in lipid metabolism and therefore would be a possible drug target. FadD13 comprises an N- and a C-terminal domain. The N-terminal domain folds into an α+β topology and can be further divided into two subdomains. The CoA binding site in ACS proteins is formed in the junction between the domains upon a 140-degree rotation of the C-terminal domain after the initial adenylation step [[cite:PMID:22560731], [cite:PMID:22365602]].
29 human proteins with this domain
Each is a reviewed human protein in the Seroatlas serome and a potential autoantibody target; this domain groups them into one antibody-relevant category. Every entry links to its own record.
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