KRT18
Keratin, type I cytoskeletal 18
Also known as: K1C18_HUMAN
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- P05783
- Gene
- KRT18
- Ensembl
- ENSG00000111057
- Chromosome
- 12
- Canonical length
- 430 aa
- Protein class
- Cancer-related genes, Disease related genes, Human disease related genes, Predicted intracellular proteins
- Subcellular location
- Cytosol
OverviewNCBI Gene
KRT18 encodes the type I intermediate filament chain keratin 18. Keratin 18, together with its filament partner keratin 8, are perhaps the most commonly found members of the intermediate filament gene family. They are expressed in single layer epithelial tissues of the body. Mutations in this gene have been linked to cryptogenic cirrhosis. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]
Canonical amino-acid sequenceUniProt
430 residues, UniProt reviewed canonical sequence.
>P05783|KRT18
1 MSFTTRSTFS TNYRSLGSVQ APSYGARPVS SAASVYAGAG GSGSRISVSR STSFRGGMGS
61 GGLATGIAGG LAGMGGIQNE KETMQSLNDR LASYLDRVRS LETENRRLES KIREHLEKKG
121 PQVRDWSHYF KIIEDLRAQI FANTVDNARI VLQIDNARLA ADDFRVKYET ELAMRQSVEN
181 DIHGLRKVID DTNITRLQLE TEIEALKEEL LFMKKNHEEE VKGLQAQIAS SGLTVEVDAP
241 KSQDLAKIMA DIRAQYDELA RKNREELDKY WSQQIEESTT VVTTQSAEVG AAETTLTELR
301 RTVQSLEIDL DSMRNLKASL ENSLREVEAR YALQMEQLNG ILLHLESELA QTRAEGQRQA
361 QEYEALLNIK VKLEAEIATY RRLLEDGEDF NLGDALDSSN SMQTIQKTTT RRIVDGKVVS
421 ETNDTKVLRHLocalizationUniProt · AlphaFold · HPA
Whether an antibody against KRT18 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.53
- Highest tissue expression
- 590 nTPM
Expression across tissuesHPA
Tissue
- pancreas: 590 nTPM
- liver: 535 nTPM
- rectum: 462 nTPM
- placenta: 446 nTPM
- colon: 398 nTPM
- small intestine: 349 nTPM
Single-cell type
- syncytiotrophoblasts: 9,372 nCPM
- migrating cytotrophoblasts: 7,757 nCPM
- extravillous trophoblasts: 7,124 nCPM
- tuft cells: 3,827 nCPM
- cytotrophoblasts: 3,516 nCPM
- goblet cells: 3,372 nCPM
Immune cell
- basophil: 77 nTPM
- naive CD4 T-cell: 11 nTPM
- naive B-cell: 7.5 nTPM
- memory B-cell: 4.6 nTPM
- memory CD4 T-cell: 4.5 nTPM
- naive CD8 T-cell: 4.1 nTPM
Brain region
- choroid plexus: 73 nTPM
- pons: 63 nTPM
- medulla oblongata: 35 nTPM
- hypothalamus: 28 nTPM
- cerebellum: 10 nTPM
- midbrain: 8.4 nTPM
DiseaseUniProt · ClinVar · IEDB · PubMed
Four sources answering four different questions about KRT18.
Disease | AllUniProt
Conditions KRT18 is implicated in, by any mechanism.
- Cirrhosis (CIRRH) MIM:215600
Disease | GeneticClinVar
1 pathogenic / likely-pathogenic of 78 ClinVar records.
Conditions with pathogenic or likely-pathogenic variants.
- Cirrhosis, cryptogenic
- Cirrhosis, noncryptogenic, susceptibility to
Disease | ImmuneIEDB
Conditions an epitope on KRT18 was assayed in.
- psoriasis T cell
- melanoma T cell
- breast cancer T cell
Disease | AutoantibodyPubMed
Conditions in which antibodies against KRT18 are reported. Each links to that disease's full target list.
Showing 0 of 1 — disease pages carrying at least 10 antigens.
ReferencesPubMed · IEDB
Publications for KRT18 from three distinct lines of evidence, kept separate because they answer different questions: whether antibodies are directed at the protein, whether a B-cell epitope has been mapped on it, and whether a T-cell epitope has. Each is labelled with its source.
Reference: AutoantibodyPubMed
10 publications
- Elevation of anti-cytokeratin 18 antibody and circulating cytokeratin 18: anti-cytokeratin 18 antibody immune complexes in sera of patients with idiopathic pulmonary fibrosis.
2000 · Lung · RCR 1.2 · 57 citations - Epithelial Autoantigen-Specific IgG Antibody Enhances Eosinophil Extracellular Trap Formation in Severe Asthma.
2022 · Allergy Asthma Immunol Res · RCR 1.2 · 13 citations - Increased levels of IgA antibodies to cytokeratin-18 and epidermal keratin in rheumatoid arthritis.
1993 · Arthritis Rheum · RCR 0.8 · 19 citations - Increased Circulating Autoantibodies Levels of IgG, IgA, IgM Against Cytokeratin 18 and Cytokeratin 19 in Chronic Obstructive Pulmonary Disease.
2017 · Arch Med Res · RCR 0.7 · 17 citations - Increased IgA antibodies to cytokeratins in the spondyloarthropathies.
1994 · Ann Rheum Dis · RCR 0.6 · 16 citations
Show 5 more
- Cytokeratin autoantibodies: useful serologic markers for toluene diisocyanate-induced asthma.
2006 · Yonsei Med J · RCR 0.6 · 20 citations - Anti-cytokeratin antibodies in sera of the patients with autoimmune hepatitis.
2001 · Clin Exp Immunol · RCR 0.6 · 23 citations - Antibodies to cytokeratins in inflammatory arthropathies.
1997 · Semin Arthritis Rheum · RCR 0.2 · 6 citations - Circulating autoantibodies in patients with aspirin-intolerant asthma: an epiphenomenon related to airway inflammation.
2006 · J Korean Med Sci · RCR 0.1 · 4 citations - Antigen-binding characteristics of circulating IgG autoantibodies to cytokeratin 18 protein in patients with nonallergic asthma.
2006 · J Korean Med Sci · RCR 0.1 · 3 citations
Reference: T cellIEDB
5 publications
- Clonal Deletion Prunes but Does Not Eliminate Self-Specific αβ CD8(+) T Lymphocytes.
2015 · Immunity · RCR 6.4 · 266 citations - Spliced Peptides and Cytokine-Driven Changes in the Immunopeptidome of Melanoma.
2020 · Cancer Immunol Res · RCR 1.9 · 51 citations - Is an epitope on keratin 17 a major target for autoreactive T lymphocytes in psoriasis?
1999 · Clin Exp Immunol · RCR 1.7 · 74 citations - The shaping of a polyvalent and highly individual T-cell repertoire in the bone marrow of breast cancer patients.
2006 · Cancer Res · RCR 0.9 · 49 citations - High frequencies of functionally impaired cytokeratin 18-specific CD8+ T cells in healthy HLA-A2+ donors.
2005 · Eur J Immunol · RCR 0.5 · 25 citations
Sources: PubMed — antigen-level antibody evidence from a custom retrieval. Records matching a controlled set of autoantibody terms (the MeSH descriptors Autoantibodies and Autoantigens, with title and abstract term variants) were obtained through NCBI E-utilities, and their titles and abstracts parsed for constructions that direct an antibody at a named protein rather than for co-occurrence. Captured names were resolved against UniProt nomenclature and each antigen adjudicated individually against the source text. IEDB — curated epitope assays from the Immune Epitope Database (Vita et al., Nucleic Acids Research 2019). Bibliographic records from PubMed and MeSH, U.S. National Library of Medicine; citation metrics from NIH iCite (Hutchins et al., PLoS Biology 2016). Titles link to PubMed; abstracts are not reproduced here. The NLM does not endorse this analysis.
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.44
- gnomAD pLI
- 0.73
- gnomAD missense Z
- 1.04
- DepMap mean gene effect
- 0.04
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 4% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- anatomical structure morphogenesis
- extrinsic apoptotic signaling pathway
- Golgi to plasma membrane protein transport
- hepatocyte apoptotic process
- intermediate filament cytoskeleton organization
- negative regulation of apoptotic process
- tumor necrosis factor-mediated signaling pathway
Molecular functions
- cadherin binding involved in cell-cell adhesion
- RNA binding
- scaffold protein binding
- structural molecule activity
Cellular components
Protein domainsUniProt · Pfam · InterPro
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of KRT18 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads KRT18 as an antibody target. Whether an autoantibody or antibody against KRT18 could matter depends on whether native KRT18 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
KRT18 is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label KRT18 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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