DHX36
ATP-dependent DNA/RNA helicase DHX36
Also known as: DDX36, DHX36_HUMAN, KIAA1488, MLEL1, RHAU
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q9H2U1
- Gene
- DHX36
- Ensembl
- ENSG00000174953
- Chromosome
- 3
- Canonical length
- 1008 aa
- Protein class
- Enzymes, Predicted intracellular proteins, Predicted membrane proteins
- Subcellular location
- Nucleoplasm,Cytosol
OverviewNCBI Gene
This gene is a member of the DEAH-box family of RNA-dependent NTPases which are named after the conserved amino acid sequence Asp-Glu-Ala-His in motif II. The protein encoded by this gene has been shown to enhance the deadenylation and decay of mRNAs with 3'-UTR AU-rich elements (ARE-mRNA). The protein has also been shown to resolve into single strands the highly stable tetramolecular DNA configuration (G4) that can form spontaneously in guanine-rich regions of DNA. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]
Canonical amino-acid sequenceUniProt
1008 residues, UniProt reviewed canonical sequence.
>Q9H2U1|DHX36
1 MSYDYHQNWG RDGGPRSSGG GYGGGPAGGH GGNRGSGGGG GGGGGGRGGR GRHPGHLKGR
61 EIGMWYAKKQ GQKNKEAERQ ERAVVHMDER REEQIVQLLN SVQAKNDKES EAQISWFAPE
121 DHGYGTEVST KNTPCSENKL DIQEKKLINQ EKKMFRIRNR SYIDRDSEYL LQENEPDGTL
181 DQKLLEDLQK KKNDLRYIEM QHFREKLPSY GMQKELVNLI DNHQVTVISG ETGCGKTTQV
241 TQFILDNYIE RGKGSACRIV CTQPRRISAI SVAERVAAER AESCGSGNST GYQIRLQSRL
301 PRKQGSILYC TTGIILQWLQ SDPYLSSVSH IVLDEIHERN LQSDVLMTVV KDLLNFRSDL
361 KVILMSATLN AEKFSEYFGN CPMIHIPGFT FPVVEYLLED VIEKIRYVPE QKEHRSQFKR
421 GFMQGHVNRQ EKEEKEAIYK ERWPDYVREL RRRYSASTVD VIEMMEDDKV DLNLIVALIR
481 YIVLEEEDGA ILVFLPGWDN ISTLHDLLMS QVMFKSDKFL IIPLHSLMPT VNQTQVFKRT
541 PPGVRKIVIA TNIAETSITI DDVVYVIDGG KIKETHFDTQ NNISTMSAEW VSKANAKQRK
601 GRAGRVQPGH CYHLYNGLRA SLLDDYQLPE ILRTPLEELC LQIKILRLGG IAYFLSRLMD
661 PPSNEAVLLS IRHLMELNAL DKQEELTPLG VHLARLPVEP HIGKMILFGA LFCCLDPVLT
721 IAASLSFKDP FVIPLGKEKI ADARRKELAK DTRSDHLTVV NAFEGWEEAR RRGFRYEKDY
781 CWEYFLSSNT LQMLHNMKGQ FAEHLLGAGF VSSRNPKDPE SNINSDNEKI IKAVICAGLY
841 PKVAKIRLNL GKKRKMVKVY TKTDGLVAVH PKSVNVEQTD FHYNWLIYHL KMRTSSIYLY
901 DCTEVSPYCL LFFGGDISIQ KDNDQETIAV DEWIVFQSPA RIAHLVKELR KELDILLQEK
961 IESPHPVDWN DTKSRDCAVL SAIIDLIKTQ EKATPRNFPP RFQDGYYSLocalizationUniProt · AlphaFold · HPA
Whether an antibody against DHX36 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.28
- Highest tissue expression
- 55 nTPM
Expression across tissuesHPA
Tissue
- skeletal muscle: 55 nTPM
- testis: 32 nTPM
- tongue: 30 nTPM
- parathyroid gland: 27 nTPM
- thyroid gland: 22 nTPM
- lymph node: 20 nTPM
Single-cell type
- early spermatids: 583 nCPM
- late spermatids: 455 nCPM
- syncytiotrophoblasts: 427 nCPM
- somatotrophs: 376 nCPM
- thymic myoid cells: 324 nCPM
- late primary spermatocytes: 245 nCPM
Immune cell
- gdT-cell: 3.7 nTPM
- non-classical monocyte: 3.6 nTPM
- plasmacytoid DC: 3.3 nTPM
- memory CD4 T-cell: 3.2 nTPM
- naive B-cell: 3.2 nTPM
- naive CD8 T-cell: 3.1 nTPM
Brain region
- white matter: 35 nTPM
- cerebellum: 34 nTPM
- basal ganglia: 34 nTPM
- hypothalamus: 33 nTPM
- midbrain: 32 nTPM
- thalamus: 31 nTPM
DiseaseUniProt · ClinVar · IEDB · PubMed
Four sources answering four different questions about DHX36.
Disease | ImmuneIEDB
Conditions an epitope on DHX36 was assayed in.
- type 1 diabetes mellitus T cell
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.35
- gnomAD pLI
- 0.47
- gnomAD missense Z
- 1.84
- DepMap mean gene effect
- -0.81
- DepMap dependency class
- common
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 14% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- 3'-UTR-mediated mRNA destabilization
- cell differentiation
- cellular response to arsenite ion
- cellular response to heat
- cellular response to UV
- defense response to virus
- innate immune response
- negative regulation of translation
- ossification
- positive regulation of canonical NF-kappaB signal transduction
- positive regulation of cardioblast differentiation
- positive regulation of cytoplasmic translation
- positive regulation of dendritic spine morphogenesis
- positive regulation of gene expression
- positive regulation of hematopoietic progenitor cell differentiation
- positive regulation of interferon-alpha production
- positive regulation of intracellular mRNA localization
- positive regulation of mRNA 3'-end processing
- positive regulation of myeloid dendritic cell cytokine production
- positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
- positive regulation of telomere maintenance
- positive regulation of telomere maintenance via telomere lengthening
- positive regulation of transcription by RNA polymerase II
- positive regulation of transcription initiation by RNA polymerase II
- regulation of embryonic development
- regulation of mRNA stability
- regulation of transcription by RNA polymerase III
- response to exogenous dsRNA
- spermatogenesis
- telomerase RNA stabilization
Molecular functions
- ATP binding
- ATP hydrolysis activity
- ATP-dependent activity, acting on DNA
- catalytic activity, acting on a nucleic acid
- DNA helicase activity
- double-stranded RNA binding
- G-quadruplex DNA binding
- G-quadruplex RNA binding
- histone deacetylase binding
- magnesium ion binding
- mRNA 3'-UTR AU-rich region binding
- mRNA 3'-UTR binding
- mRNA 5'-UTR binding
- pre-miRNA binding
- RNA binding
- RNA helicase activity
- RNA polymerase II cis-regulatory region sequence-specific DNA binding
- single-stranded DNA binding
- telomerase RNA binding
- transcription cis-regulatory region binding
Cellular components
Protein domainsUniProt · Pfam · InterPro
- Helicase, C-terminal domain-like
- DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
- Helicase-associated domain
- DEAD/DEAH-box helicase domain
- DEAD-box helicase, OB fold
- Helicase superfamily 1/2, ATP-binding domain
- P-loop containing nucleoside triphosphate hydrolase
- Helicase associated domain (HA2), winged-helix domain
- RNA helicase, C-terminal domain
- DEAD/DEAH box helicase
- Helicase conserved C-terminal domain
- Helicase associated domain (HA2), winged-helix
- Oligonucleotide/oligosaccharide-binding (OB)-fold
- Helicase associated domain (HA2), ratchet-like
- C-terminal domain in RNA helicases
KeywordsUniProt
- Acetylation
- Activator
- Antiviral defense
- ATP-binding
- Cell projection
- Chromosome
- Coiled coil
- Cytoplasm
- Developmental protein
- Differentiation
- DNA-binding
- Helicase
- Hydrolase
- Immunity
- Innate immunity
- Magnesium
- Metal-binding
- Mitochondrion
- Nucleotide-binding
- Nucleus
- Phosphoprotein
- Repeat
- Repressor
- RNA-binding
- Telomere
- Transcription
- Transcription regulation
- Translation regulation
- Transport
InteractionsUniProt · HPA
Protein binding partners of DHX36 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads DHX36 as an antibody target. Whether an autoantibody or antibody against DHX36 could matter depends on whether native DHX36 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
DHX36 is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label DHX36 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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