SLMAP
Sarcolemmal membrane-associated protein
Also known as: KIAA1601, SLAP, SLMAP_HUMAN
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q14BN4
- Gene
- SLMAP
- Ensembl
- ENSG00000163681
- Chromosome
- 3
- Canonical length
- 828 aa
- Protein class
- Predicted intracellular proteins, Predicted membrane proteins
- Subcellular location
- Endoplasmic reticulum
- Quaternary structure
- Homodimer
OverviewNCBI Gene
This gene encodes a component of a conserved striatin-interacting phosphatase and kinase complex. Striatin family complexes participate in a variety of cellular processes including signaling, cell cycle control, cell migration, Golgi assembly, and apoptosis. The protein encoded by this gene is a coiled-coil, tail-anchored membrane protein with a single C-terminal transmembrane domain that is posttranslationally inserted into membranes. Mutations in this gene are associated with Brugada syndrome, a cardiac channelopathy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2015]
Canonical amino-acid sequenceUniProt
828 residues, UniProt reviewed canonical sequence.
>Q14BN4|SLMAP
1 MPSALAIFTC RPNSHPFQER HVYLDEPIKI GRSVARCRPA QNNATFDCKV LSRNHALVWF
61 DHKTGKFYLQ DTKSSNGTFI NSQRLSRGSE ESPPCEILSG DIIQFGVDVT ENTRKVTHGC
121 IVSTIKLFLP DGMEARLRSD VIHAPLPSPV DKVAANTPSM YSQELFQLSQ YLQEALHREQ
181 MLEQKLATLQ RLLAITQEAS DTSWQALIDE DRLLSRLEVM GNQLQACSKN QTEDSLRKEL
241 IALQEDKHNY ETTAKESLRR VLQEKIEVVR KLSEVERSLS NTEDECTHLK EMNERTQEEL
301 RELANKYNGA VNEIKDLSDK LKVAEGKQEE IQQKGQAEKK ELQHKIDEME EKEQELQAKI
361 EALQADNDFT NERLTALQVR LEHLQEKTLK ECSSLEHLLS KSGGDCTFIH QFIECQKKLI
421 VEGHLTKAVE ETKLSKENQT RAKESDFSDT LSPSKEKSSD DTTDAQMDEQ DLNEPLAKVS
481 LLKDDLQGAQ SEIEAKQEIQ HLRKELIEAQ ELARTSKQKC FELQALLEEE RKAYRNQVEE
541 STKQIQVLQA QLQRLHIDTE NLREEKDSEI TSTRDELLSA RDEILLLHQA AAKVASERDT
601 DIASLQEELK KVRAELERWR KAASEYEKEI TSLQNSFQLR CQQCEDQQRE EATRLQGELE
661 KLRKEWNALE TECHSLKREN VLLSSELQRQ EKELHNSQKQ SLELTSDLSI LQMSRKELEN
721 QVGSLKEQHL RDSADLKTLL SKAENQAKDV QKEYEKTQTV LSELKLKFEM TEQEKQSITD
781 ELKQCKNNLK LLREKGNNKP WPWMPMLAAL VAVTAIVLYV PGLARASPLocalizationUniProt · AlphaFold · HPA
Whether an antibody against SLMAP can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Cell surface
- Secreted
- No
- Transmembrane segments
- 2
- Mean surface accessibility (rSASA)
- 0.49
- Highest tissue expression
- 101 nTPM
Expression across tissuesHPA
Tissue
- smooth muscle: 101 nTPM
- colon: 87 nTPM
- heart muscle: 81 nTPM
- esophagus: 73 nTPM
- seminal vesicle: 71 nTPM
- blood vessel: 69 nTPM
Single-cell type
- smooth muscle cells: 910 nCPM
- neutrophils: 772 nCPM
- myonuclei: 638 nCPM
- ocular epithelial cells: 583 nCPM
- basal keratinocytes: 529 nCPM
- endometrial luminal cells: 494 nCPM
Immune cell
- eosinophil: 11 nTPM
- neutrophil: 9.5 nTPM
- NK-cell: 4.9 nTPM
- T-reg: 4.1 nTPM
- basophil: 4 nTPM
- memory B-cell: 3.8 nTPM
Brain region
- basal ganglia: 33 nTPM
- choroid plexus: 26 nTPM
- cerebellum: 25 nTPM
- thalamus: 22 nTPM
- midbrain: 20 nTPM
- amygdala: 20 nTPM
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.24
- gnomAD pLI
- 1
- gnomAD missense Z
- 1.7
- DepMap mean gene effect
- -0.18
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 3% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- muscle contraction
- negative regulation of hippo signaling
- protein localization to plasma membrane
- regulation of membrane depolarization during cardiac muscle cell action potential
- regulation of sodium ion transmembrane transport
Molecular functions
Cellular components
Protein domainsUniProt · Pfam · InterPro
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of SLMAP in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads SLMAP as an antibody target. Whether an autoantibody or antibody against SLMAP could matter depends on whether native SLMAP is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
SLMAP is annotated at the cell surface, where native SLMAP is exposed to circulating antibodies and is a prime autoantibody target that could block, deplete, or overstimulate it.
Annotation status
The present source text does not explicitly label SLMAP as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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