RAD51D
DNA repair protein RAD51 homolog 4
Also known as: HsTRAD, R51H3, RA51D_HUMAN, RAD51L3, Trad
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- O75771
- Gene
- RAD51D
- Ensembl
- ENSG00000185379
- Chromosome
- 17
- Canonical length
- 328 aa
- Protein class
- Cancer-related genes, Disease related genes, Human disease related genes, Predicted intracellular proteins
OverviewNCBI Gene
The protein encoded by this gene is a member of the RAD51 protein family. RAD51 family members are highly similar to bacterial RecA and Saccharomyces cerevisiae Rad51, which are known to be involved in the homologous recombination and repair of DNA. This protein forms a complex with several other members of the RAD51 family, including RAD51L1, RAD51L2, and XRCC2. The protein complex formed with this protein has been shown to catalyze homologous pairing between single- and double-stranded DNA, and is thought to play a role in the early stage of recombinational repair of DNA. Alternative splicing results in multiple transcript variants. Read-through transcription also exists between this gene and the downstream ring finger and FYVE-like domain containing 1 (RFFL) gene. [provided by RefSeq, Jan 2011]
Canonical amino-acid sequenceUniProt
328 residues, UniProt reviewed canonical sequence.
>O75771|RAD51D
1 MGVLRVGLCP GLTEEMIQLL RSHRIKTVVD LVSADLEEVA QKCGLSYKAL VALRRVLLAQ
61 FSAFPVNGAD LYEELKTSTA ILSTGIGSLD KLLDAGLYTG EVTEIVGGPG SGKTQVCLCM
121 AANVAHGLQQ NVLYVDSNGG LTASRLLQLL QAKTQDEEEQ AEALRRIQVV HAFDIFQMLD
181 VLQELRGTVA QQVTGSSGTV KVVVVDSVTA VVSPLLGGQQ REGLALMMQL ARELKTLARD
241 LGMAVVVTNH ITRDRDSGRL KPALGRSWSF VPSTRILLDT IEGAGASGGR RMACLAKSSR
301 QPTGFQEMVD IGTWGTSEQS ATLQGDQTLocalizationUniProt · AlphaFold · HPA
Whether an antibody against RAD51D can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.31
- Highest tissue expression
- 7.3 nTPM
Expression across tissuesHPA
Tissue
- thymus: 7.3 nTPM
- basal ganglia: 6.7 nTPM
- cerebral cortex: 6.6 nTPM
- ovary: 6.3 nTPM
- spleen: 6.2 nTPM
- cervix: 5.9 nTPM
Single-cell type
- late spermatids: 169 nCPM
- early spermatids: 52 nCPM
- megakaryocytes: 6.2 nCPM
- late primary spermatocytes: 3.7 nCPM
- medullary thymic epithelial cells: 2.4 nCPM
- hematopoietic stem cells: 1.5 nCPM
Immune cell
- NK-cell: 9.2 nTPM
- gdT-cell: 8 nTPM
- memory B-cell: 7.2 nTPM
- memory CD8 T-cell: 7.1 nTPM
- naive B-cell: 6.8 nTPM
- plasmacytoid DC: 6.6 nTPM
Brain region
- cerebral cortex: 11 nTPM
- hypothalamus: 11 nTPM
- white matter: 11 nTPM
- midbrain: 11 nTPM
- medulla oblongata: 10 nTPM
- basal ganglia: 10 nTPM
DiseaseUniProt · ClinVar · IEDB · PubMed
Four sources answering four different questions about RAD51D.
Disease | AllUniProt
Conditions RAD51D is implicated in, by any mechanism.
- Breast-ovarian cancer, familial, 4 (BROVCA4) MIM:614291
Disease | GeneticClinVar
256 pathogenic / likely-pathogenic of 2,070 ClinVar records.
Conditions with pathogenic or likely-pathogenic variants.
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 1.22
- gnomAD pLI
- 0
- gnomAD missense Z
- -0.11
- DepMap mean gene effect
- -0.55
- DepMap dependency class
- common
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 6% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- DNA repair
- DNA strand invasion
- double-strand break repair via homologous recombination
- interstrand cross-link repair
- reciprocal meiotic recombination
- regulation of cell cycle
- telomere maintenance
- telomere maintenance via recombination
Molecular functions
- ATP binding
- ATP-dependent activity, acting on DNA
- ATP-dependent DNA damage sensor activity
- DNA binding
- gamma-tubulin binding
- single-stranded DNA binding
Cellular components
Protein domainsUniProt · Pfam · InterPro
- AAA+ ATPase domain
- Rad51-like, C-terminal
- DNA recombination and repair protein, RecA-like
- DNA recombination and repair protein RecA-like, ATP-binding domain
- P-loop containing nucleoside triphosphate hydrolase
- Rad51
- DNA repair protein RAD51 homolog 4, C-terminal
- RAD51D, N-terminal domain
- Homologous Recombination Repair RAD51 Paralog
- RAD51D, N-terminal domain
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of RAD51D in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads RAD51D as an antibody target. Whether an autoantibody or antibody against RAD51D could matter depends on whether native RAD51D is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
RAD51D is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label RAD51D as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
Loading the interactive Seroatlas protein explorer...