SH3D19
SH3 domain-containing protein 19
Also known as: DKFZp434D0215, EBP, Eve-1, EVE1, Kryn, SH319_HUMAN, SH3P19
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q5HYK7
- Gene
- SH3D19
- Ensembl
- ENSG00000109686
- Chromosome
- 4
- Canonical length
- 790 aa
- Protein class
- Predicted intracellular proteins
- Subcellular location
- Nucleoplasm,Cytosol
OverviewNCBI Gene
This gene encodes a multiple SH3 domain-containing protein, which interacts with other proteins, such as EBP and members of ADAM family, via the SH3 domains. This protein may be involved in suppression of Ras-induced cellular transformation and Ras-mediated activation of ELK1 by EBP, and regulation of ADAM proteins in the signaling of EGFR-ligand shedding. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]
Canonical amino-acid sequenceUniProt
790 residues, UniProt reviewed canonical sequence.
>Q5HYK7|SH3D19
1 MNIMNTEQSQ NSIVSRIKVF EGQTNIETSG LPKKPEITPR SLPPKPTVSS GKPSVAPKPA
61 ANRASGEWDS GTENRLKVTS KEGLTPYPPL QEAGSIPVTK PELPKKPNPG LIRSVNPEIP
121 GRGPLAESSD SGKKVPTPAP RPLLLKKSVS SENPTYPSAP LKPVTVPPRL AGASQAKAYK
181 SLGEGPPANP PVPVLQSKPL VDIDLISFDD DVLPTPSGNL AEESVGSEMV LDPFQLPAKT
241 EPIKERAVQP APTRKPTVIR IPAKPGKCLH EDPQSPPPLP AEKPIGNTFS TVSGKLSNVE
301 RTRNLESNHP GQTGGFVRVP PRLPPRPVNG KTIPTQQPPT KVPPERPPPP KLSATRRSNK
361 KLPFNRSSSD MDLQKKQSNL ATGLSKAKSQ VFKNQDPVLP PRPKPGHPLY SKYMLSVPHG
421 IANEDIVSQN PGELSCKRGD VLVMLKQTEN NYLECQKGED TGRVHLSQMK IITPLDEHLR
481 SRPNDPSHAQ KPVDSGAPHA VVLHDFPAEQ VDDLNLTSGE IVYLLEKIDT DWYRGNCRNQ
541 IGIFPANYVK VIIDIPEGGN GKRECVSSHC VKGSRCVARF EYIGEQKDEL SFSEGEIIIL
601 KEYVNEEWAR GEVRGRTGIF PLNFVEPVED YPTSGANVLS TKVPLKTKKE DSGSNSQVNS
661 LPAEWCEALH SFTAETSDDL SFKRGDRIQI LERLDSDWCR GRLQDREGIF PAVFVRPCPA
721 EAKSMLAIVP KGRKAKALYD FRGENEDELS FKAGDIITEL ESVDDDWMSG ELMGKSGIFP
781 KNYIQFLQISLocalizationUniProt · AlphaFold · HPA
Whether an antibody against SH3D19 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.56
- Highest tissue expression
- 66 nTPM
Expression across tissuesHPA
Tissue
- adipose tissue: 66 nTPM
- heart muscle: 60 nTPM
- gallbladder: 60 nTPM
- ovary: 53 nTPM
- choroid plexus: 52 nTPM
- liver: 47 nTPM
Single-cell type
- choroid plexus epithelial cells: 2,920 nCPM
- fibro-adipogenic progenitors: 886 nCPM
- adipocytes: 731 nCPM
- oligodendrocyte progenitor cells: 707 nCPM
- oligodendrocytes: 695 nCPM
- foveolar cells: 598 nCPM
Immune cell
- plasmacytoid DC: 0.3 nTPM
- basophil: 0 nTPM
- classical monocyte: 0 nTPM
- eosinophil: 0 nTPM
- gdT-cell: 0 nTPM
- intermediate monocyte: 0 nTPM
Brain region
- choroid plexus: 238 nTPM
- white matter: 53 nTPM
- basal ganglia: 45 nTPM
- cerebral cortex: 39 nTPM
- thalamus: 39 nTPM
- hypothalamus: 39 nTPM
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.61
- gnomAD pLI
- 0
- gnomAD missense Z
- 0.58
- DepMap mean gene effect
- -0.01
- DepMap dependency class
- none
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 3% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- cytoskeleton organization
- positive regulation of membrane protein ectodomain proteolysis
- regulation of cell morphogenesis
Molecular functions
Cellular components
Protein domainsUniProt · Pfam · InterPro
- SH3 domain
- SH3-like domain superfamily
- Endophilin/SH3RF
- SH3 domain
- Variant SH3 domain
- Variant SH3 domain
- SH3 domain-containing protein 19, SH3 domain 1
- SH3 domain-containing protein 19, SH3 domain 3
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of SH3D19 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads SH3D19 as an antibody target. Whether an autoantibody or antibody against SH3D19 could matter depends on whether native SH3D19 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
SH3D19 is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label SH3D19 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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