LIMK2
LIM domain kinase 2
Also known as: LIMK2_HUMAN
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- P53671
- Gene
- LIMK2
- Ensembl
- ENSG00000182541
- Chromosome
- 22
- Canonical length
- 638 aa
- Protein class
- Enzymes, Predicted intracellular proteins
- Subcellular location
- Nucleoplasm,Cytosol
OverviewNCBI Gene
There are approximately 40 known eukaryotic LIM proteins, so named for the LIM domains they contain. LIM domains are highly conserved cysteine-rich structures containing 2 zinc fingers. Although zinc fingers usually function by binding to DNA or RNA, the LIM motif probably mediates protein-protein interactions. LIM kinase-1 and LIM kinase-2 belong to a small subfamily with a unique combination of 2 N-terminal LIM motifs and a C-terminal protein kinase domain. The protein encoded by this gene is phosphorylated and activated by ROCK, a downstream effector of Rho, and the encoded protein, in turn, phosphorylates cofilin, inhibiting its actin-depolymerizing activity. It is thought that this pathway contributes to Rho-induced reorganization of the actin cytoskeleton. At least three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Canonical amino-acid sequenceUniProt
638 residues, UniProt reviewed canonical sequence.
>P53671|LIMK2
1 MSALAGEDVW RCPGCGDHIA PSQIWYRTVN ETWHGSCFRC SECQDSLTNW YYEKDGKLYC
61 PKDYWGKFGE FCHGCSLLMT GPFMVAGEFK YHPECFACMS CKVIIEDGDA YALVQHATLY
121 CGKCHNEVVL APMFERLSTE SVQEQLPYSV TLISMPATTE GRRGFSVSVE SACSNYATTV
181 QVKEVNRMHI SPNNRNAIHP GDRILEINGT PVRTLRVEEV EDAISQTSQT LQLLIEHDPV
241 SQRLDQLRLE ARLAPHMQNA GHPHALSTLD TKENLEGTLR RRSLRRSNSI SKSPGPSSPK
301 EPLLFSRDIS RSESLRCSSS YSQQIFRPCD LIHGEVLGKG FFGQAIKVTH KATGKVMVMK
361 ELIRCDEETQ KTFLTEVKVM RSLDHPNVLK FIGVLYKDKK LNLLTEYIEG GTLKDFLRSM
421 DPFPWQQKVR FAKGIASGMA YLHSMCIIHR DLNSHNCLIK LDKTVVVADF GLSRLIVEER
481 KRAPMEKATT KKRTLRKNDR KKRYTVVGNP YWMAPEMLNG KSYDETVDIF SFGIVLCEII
541 GQVYADPDCL PRTLDFGLNV KLFWEKFVPT DCPPAFFPLA AICCRLEPES RPAFSKLEDS
601 FEALSLYLGE LGIPLPAELE ELDHTVSMQY GLTRDSPPLocalizationUniProt · AlphaFold · HPA
Whether an antibody against LIMK2 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.35
- Highest tissue expression
- 67 nTPM
Expression across tissuesHPA
Tissue
- esophagus: 67 nTPM
- skin: 67 nTPM
- bone marrow: 51 nTPM
- choroid plexus: 49 nTPM
- salivary gland: 48 nTPM
- placenta: 45 nTPM
Single-cell type
- neutrophils: 3,235 nCPM
- neutrophil progenitors: 295 nCPM
- respiratory secretory cells: 240 nCPM
- syncytiotrophoblasts: 214 nCPM
- respiratory deuterosomal cells: 197 nCPM
- respiratory ciliated cells: 167 nCPM
Immune cell
- neutrophil: 97 nTPM
- eosinophil: 40 nTPM
- T-reg: 15 nTPM
- NK-cell: 6.7 nTPM
- basophil: 5.9 nTPM
- MAIT T-cell: 5.9 nTPM
Brain region
- medulla oblongata: 71 nTPM
- midbrain: 63 nTPM
- thalamus: 63 nTPM
- spinal cord: 60 nTPM
- choroid plexus: 59 nTPM
- white matter: 58 nTPM
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.52
- gnomAD pLI
- 0.02
- gnomAD missense Z
- 1.4
- DepMap mean gene effect
- 0.03
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 5% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- actin cytoskeleton organization
- astral microtubule organization
- cornea development in camera-type eye
- establishment of vesicle localization
- head development
- negative regulation of cilium assembly
- positive regulation of protein localization to nucleus
- protein phosphorylation
- spermatogenesis
Molecular functions
Cellular components
Protein domainsUniProt · Pfam · InterPro
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of LIMK2 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads LIMK2 as an antibody target. Whether an autoantibody or antibody against LIMK2 could matter depends on whether native LIMK2 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
LIMK2 is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label LIMK2 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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