ESRRB
Steroid hormone receptor ERR2
Also known as: DFNB35, ERR2, ERR2_HUMAN, ERRb, ERRbeta, ESRL2, NR3B2
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- O95718
- Gene
- ESRRB
- Ensembl
- ENSG00000119715
- Chromosome
- 14
- Canonical length
- 433 aa
- Protein class
- Disease related genes, Human disease related genes, Nuclear receptors, Predicted intracellular proteins, Transcription factors
- Subcellular location
- Nucleoplasm,Cytosol
OverviewNCBI Gene
This gene encodes a protein with similarity to the estrogen receptor. Its function is unknown; however, a similar protein in mouse plays an essential role in placental development. [provided by RefSeq, Jul 2008]
Canonical amino-acid sequenceUniProt
433 residues, UniProt reviewed canonical sequence.
>O95718|ESRRB
1 MSSDDRHLGS SCGSFIKTEP SSPSSGIDAL SHHSPSGSSD ASGGFGLALG THANGLDSPP
61 MFAGAGLGGT PCRKSYEDCA SGIMEDSAIK CEYMLNAIPK RLCLVCGDIA SGYHYGVASC
121 EACKAFFKRT IQGNIEYSCP ATNECEITKR RRKSCQACRF MKCLKVGMLK EGVRLDRVRG
181 GRQKYKRRLD SESSPYLSLQ ISPPAKKPLT KIVSYLLVAE PDKLYAMPPP GMPEGDIKAL
241 TTLCDLADRE LVVIIGWAKH IPGFSSLSLG DQMSLLQSAW MEILILGIVY RSLPYDDKLV
301 YAEDYIMDEE HSRLAGLLEL YRAILQLVRR YKKLKVEKEE FVTLKALALA NSDSMYIEDL
361 EAVQKLQDLL HEALQDYELS QRHEEPWRTG KLLLTLPLLR QTAAKAVQHF YSVKLQGKVP
421 MHKLFLEMLE AKVLocalizationUniProt · AlphaFold · HPA
Whether an antibody against ESRRB can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.4
- Highest tissue expression
- 34 nTPM
Expression across tissuesHPA
Tissue
- retina: 34 nTPM
- kidney: 15 nTPM
- skeletal muscle: 6.1 nTPM
- heart muscle: 4.6 nTPM
- stomach: 3.7 nTPM
- testis: 1.8 nTPM
Single-cell type
- rod photoreceptor cells: 838 nCPM
- loop of henle epithelial cells: 497 nCPM
- distal convoluted tubule cells: 461 nCPM
- retinal horizontal cells: 453 nCPM
- myonuclei: 261 nCPM
- late spermatids: 98 nCPM
Immune cell
- basophil: 0 nTPM
- classical monocyte: 0 nTPM
- eosinophil: 0 nTPM
- gdT-cell: 0 nTPM
- intermediate monocyte: 0 nTPM
- MAIT T-cell: 0 nTPM
Brain region
- medulla oblongata: 3.8 nTPM
- midbrain: 3.3 nTPM
- choroid plexus: 3.2 nTPM
- thalamus: 2.5 nTPM
- white matter: 2.3 nTPM
- pons: 2.1 nTPM
DiseaseUniProt · ClinVar · IEDB · PubMed
Four sources answering four different questions about ESRRB.
Disease | AllUniProt
Conditions ESRRB is implicated in, by any mechanism.
- Deafness, autosomal recessive, 35 (DFNB35) MIM:608565
Disease | GeneticClinVar
27 pathogenic / likely-pathogenic of 327 ClinVar records.
Conditions with pathogenic or likely-pathogenic variants.
- Autosomal recessive nonsyndromic hearing loss 35
- Rare genetic deafness
- ESRRB-related disorder
- Monogenic hearing loss
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.52
- gnomAD pLI
- 0.13
- gnomAD missense Z
- 1.56
- DepMap mean gene effect
- 0.05
- DepMap dependency class
- none
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 2% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- cell dedifferentiation
- cell population proliferation
- inner ear development
- morula formation
- negative regulation of stem cell differentiation
- photoreceptor cell maintenance
- positive regulation of DNA-templated transcription
- positive regulation of stem cell population maintenance
- positive regulation of transcription by RNA polymerase II
- regulation of DNA-templated transcription
- regulation of stem cell division
- regulation of transcription by RNA polymerase II
- somatic stem cell population maintenance
- stem cell division
- stem cell population maintenance
Molecular functions
- cis-regulatory region sequence-specific DNA binding
- DNA-binding transcription activator activity, RNA polymerase II-specific
- DNA-binding transcription factor activity
- DNA-binding transcription factor activity, RNA polymerase II-specific
- estrogen response element binding
- nuclear receptor activity
- nuclear steroid receptor activity
- RNA polymerase II cis-regulatory region sequence-specific DNA binding
- RNA polymerase II complex binding
- RNA polymerase II-specific DNA-binding transcription factor binding
- sequence-specific DNA binding
- sequence-specific double-stranded DNA binding
- steroid binding
- zinc ion binding
Cellular components
Protein domainsUniProt · Pfam · InterPro
- Nuclear hormone receptor, ligand-binding domain
- Zinc finger, nuclear hormone receptor-type
- Nuclear hormone receptor
- Zinc finger, NHR/GATA-type
- Estrogen receptor/oestrogen-related receptor
- Oestrogen-related receptor
- Nuclear hormone receptor-like domain superfamily
- Nuclear hormone receptor family NR3 subfamily
- Ligand-binding domain of nuclear hormone receptor
- Double treble clef zinc finger, C4 type
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of ESRRB in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads ESRRB as an antibody target. Whether an autoantibody or antibody against ESRRB could matter depends on whether native ESRRB is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
ESRRB is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label ESRRB as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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