BMP5
Bone morphogenetic protein 5
Also known as: BMP5_HUMAN
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- P22003
- Gene
- BMP5
- Ensembl
- ENSG00000112175
- Chromosome
- 6
- Canonical length
- 454 aa
- Protein class
- Predicted secreted proteins
- Secretome location
- Secreted - unknown location
OverviewNCBI Gene
This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate each subunit of the disulfide-linked homodimer, which plays a role in bone and cartilage development. Polymorphisms in this gene may be associated with osteoarthritis in human patients. This gene is differentially regulated in multiple human cancers. This gene encodes distinct protein isoforms that may be similarly proteolytically processed. [provided by RefSeq, Jul 2016]
Canonical amino-acid sequenceUniProt
454 residues, UniProt reviewed canonical sequence.
>P22003|BMP5
1 MHLTVFLLKG IVGFLWSCWV LVGYAKGGLG DNHVHSSFIY RRLRNHERRE IQREILSILG
61 LPHRPRPFSP GKQASSAPLF MLDLYNAMTN EENPEESEYS VRASLAEETR GARKGYPASP
121 NGYPRRIQLS RTTPLTTQSP PLASLHDTNF LNDADMVMSF VNLVERDKDF SHQRRHYKEF
181 RFDLTQIPHG EAVTAAEFRI YKDRSNNRFE NETIKISIYQ IIKEYTNRDA DLFLLDTRKA
241 QALDVGWLVF DITVTSNHWV INPQNNLGLQ LCAETGDGRS INVKSAGLVG RQGPQSKQPF
301 MVAFFKASEV LLRSVRAANK RKNQNRNKSS SHQDSSRMSS VGDYNTSEQK QACKKHELYV
361 SFRDLGWQDW IIAPEGYAAF YCDGECSFPL NAHMNATNHA IVQTLVHLMF PDHVPKPCCA
421 PTKLNAISVL YFDDSSNVIL KKYRNMVVRS CGCHLocalizationUniProt · AlphaFold · HPA
Whether an antibody against BMP5 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Secreted
- Secreted
- Yes
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.38
- Highest tissue expression
- 67 nTPM
Expression across tissuesHPA
Tissue
- placenta: 67 nTPM
- prostate: 13 nTPM
- lung: 12 nTPM
- tongue: 11 nTPM
- small intestine: 9.2 nTPM
- urinary bladder: 8.7 nTPM
Single-cell type
- fibro-adipogenic progenitors: 283 nCPM
- pericytes: 88 nCPM
- pancreatic islet cells: 70 nCPM
- fibroblasts: 63 nCPM
- vascular smooth muscle cells: 57 nCPM
- adipocytes: 54 nCPM
Immune cell
- basophil: 0 nTPM
- classical monocyte: 0 nTPM
- eosinophil: 0 nTPM
- gdT-cell: 0 nTPM
- intermediate monocyte: 0 nTPM
- MAIT T-cell: 0 nTPM
Brain region
- pons: 6.6 nTPM
- choroid plexus: 4.6 nTPM
- medulla oblongata: 2.7 nTPM
- cerebellum: 1.5 nTPM
- cerebral cortex: 1.2 nTPM
- basal ganglia: 1 nTPM
DiseaseUniProt · ClinVar · IEDB · PubMed
Four sources answering four different questions about BMP5.
Disease | GeneticClinVar
2 pathogenic / likely-pathogenic of 98 ClinVar records.
Conditions with pathogenic or likely-pathogenic variants.
- Microtia
- Patellar aplasia
- Hypoplastic ischiopubic ramus
- Atrioventricular canal defect
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.7
- gnomAD pLI
- 0
- gnomAD missense Z
- 0.63
- DepMap mean gene effect
- 0.14
- DepMap dependency class
- none
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 3% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- allantois development
- anterior head development
- BMP signaling pathway
- cardiac muscle tissue development
- cardiac septum morphogenesis
- cartilage development
- chorio-allantoic fusion
- ear development
- endocardial cushion formation
- heart development
- heart trabecula morphogenesis
- hindbrain development
- male genitalia development
- negative regulation of aldosterone biosynthetic process
- negative regulation of cell population proliferation
- negative regulation of cortisol biosynthetic process
- negative regulation of epithelial to mesenchymal transition
- negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
- negative regulation of insulin-like growth factor receptor signaling pathway
- negative regulation of mononuclear cell migration
- negative regulation of steroid biosynthetic process
- neural fold elevation formation
- ossification
- pattern specification process
- pericardium morphogenesis
- pharyngeal system development
- positive regulation of cell population proliferation
- positive regulation of dendrite development
- positive regulation of epithelial cell proliferation
- positive regulation of SMAD protein signal transduction
- positive regulation of transcription by RNA polymerase II
- skeletal system development
- type B pancreatic cell development
Molecular functions
Cellular components
Protein domainsUniProt · Pfam · InterPro
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of BMP5 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads BMP5 as an antibody target. Whether an autoantibody or antibody against BMP5 could matter depends on whether native BMP5 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
BMP5 is annotated as secreted, so native BMP5 circulates and is directly accessible to antibodies. Secreted and cell-surface proteins are the autoantibody targets most likely to act like drugs, blocking or depleting the native protein.
Annotation status
The present source text does not explicitly label BMP5 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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