TRIM22
E3 ubiquitin-protein ligase TRIM22
Also known as: GPSTAF50, RNF94, STAF50, TRI22_HUMAN
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q8IYM9
- Gene
- TRIM22
- Ensembl
- ENSG00000132274
- Chromosome
- 11
- Canonical length
- 498 aa
- Protein class
- Enzymes, Predicted intracellular proteins
- Subcellular location
- Nucleoplasm,Nuclear bodies,Golgi apparatus
- Quaternary structure
- Homotrimer
OverviewNCBI Gene
The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. This protein localizes to the cytoplasm and its expression is induced by interferon. The protein is involved in innate immunity against different DNA and RNA viruses. [provided by RefSeq, Oct 2021]
Canonical amino-acid sequenceUniProt
498 residues, UniProt reviewed canonical sequence.
>Q8IYM9|TRIM22
1 MDFSVKVDIE KEVTCPICLE LLTEPLSLDC GHSFCQACIT AKIKESVIIS RGESSCPVCQ
61 TRFQPGNLRP NRHLANIVER VKEVKMSPQE GQKRDVCEHH GKKLQIFCKE DGKVICWVCE
121 LSQEHQGHQT FRINEVVKEC QEKLQVALQR LIKEDQEAEK LEDDIRQERT AWKNYIQIER
181 QKILKGFNEM RVILDNEEQR ELQKLEEGEV NVLDNLAAAT DQLVQQRQDA STLISDLQRR
241 LRGSSVEMLQ DVIDVMKRSE SWTLKKPKSV SKKLKSVFRV PDLSGMLQVL KELTDVQYYW
301 VDVMLNPGSA TSNVAISVDQ RQVKTVRTCT FKNSNPCDFS AFGVFGCQYF SSGKYYWEVD
361 VSGKIAWILG VHSKISSLNK RKSSGFAFDP SVNYSKVYSR YRPQYGYWVI GLQNTCEYNA
421 FEDSSSSDPK VLTLFMAVPP CRIGVFLDYE AGIVSFFNVT NHGALIYKFS GCRFSRPAYP
481 YFNPWNCLVP MTVCPPSSLocalizationUniProt · AlphaFold · HPA
Whether an antibody against TRIM22 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.36
- Highest tissue expression
- 111 nTPM
Expression across tissuesHPA
Tissue
- spleen: 111 nTPM
- lymph node: 93 nTPM
- tonsil: 80 nTPM
- thymus: 76 nTPM
- appendix: 70 nTPM
- lung: 61 nTPM
Single-cell type
- neutrophils: 222 nCPM
- b-cells: 190 nCPM
- microglia: 188 nCPM
- kupffer cells: 158 nCPM
- hematopoietic stem cells: 154 nCPM
- t-cells: 123 nCPM
Immune cell
- T-reg: 198 nTPM
- non-classical monocyte: 184 nTPM
- total PBMC: 180 nTPM
- plasmacytoid DC: 170 nTPM
- naive B-cell: 161 nTPM
- memory B-cell: 149 nTPM
Brain region
- white matter: 92 nTPM
- cerebral cortex: 80 nTPM
- choroid plexus: 79 nTPM
- cerebellum: 69 nTPM
- spinal cord: 67 nTPM
- medulla oblongata: 67 nTPM
DiseaseUniProt · ClinVar · IEDB · PubMed
Four sources answering four different questions about TRIM22.
Disease | ImmuneIEDB
Conditions an epitope on TRIM22 was assayed in.
- type 1 diabetes mellitus T cell
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.99
- gnomAD pLI
- 0
- gnomAD missense Z
- 0.13
- DepMap mean gene effect
- 0.03
- DepMap dependency class
- none
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 4% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- defense response to virus
- immune response
- innate immune response
- positive regulation of autophagy
- positive regulation of canonical NF-kappaB signal transduction
- positive regulation of defense response to virus by host
- protein K63-linked ubiquitination
- regulation of DNA-templated transcription
- regulation of gene expression
- regulation of protein localization
- response to virus
Molecular functions
- identical protein binding
- protein kinase binding
- protein-macromolecule adaptor activity
- transcription coactivator activity
- transcription corepressor activity
- ubiquitin protein ligase activity
- zinc ion binding
Cellular components
Protein domainsUniProt · Pfam · InterPro
- B-box-type zinc finger
- Zinc finger, RING-type
- B30.2/SPRY domain
- SPRY domain
- Butyrophylin-like, SPRY domain
- Zinc finger, RING/FYVE/PHD-type
- Concanavalin A-like lectin/glucanase domain superfamily
- Zinc finger, RING-type, conserved site
- Zinc finger, RING-type, eukaryotic
- B30.2/SPRY domain superfamily
- Tripartite motif-containing
- SPRY domain
- B-box zinc finger
- RING-type zinc-finger
- TRIM22, PRY/SPRY domain
KeywordsUniProt
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads TRIM22 as an antibody target. Whether an autoantibody or antibody against TRIM22 could matter depends on whether native TRIM22 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
TRIM22 is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label TRIM22 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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