LRWD1
Leucine-rich repeat and WD repeat-containing protein 1
Also known as: CENP-33, DKFZp434K1815, LRWD1_HUMAN, ORCA
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q9UFC0
- Gene
- LRWD1
- Ensembl
- ENSG00000161036
- Chromosome
- 7
- Canonical length
- 647 aa
- Protein class
- Predicted intracellular proteins
- Subcellular location
- Nucleoplasm,Nucleoli,Nucleoli rim,Vesicles
OverviewNCBI Gene
The protein encoded by this gene interacts with components of the origin recognition complex (ORC) and regulates the formation of the prereplicative complex. The encoded protein stabilizes the ORC and therefore aids in DNA replication. This protein is required for the G1/S phase transition of the cell cycle. In addition, the encoded protein binds to trimethylated histone H3 in heterochromatin and recruits the ORC and lysine methyltransferases, which help maintain the repressive heterochromatic state. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]
Canonical amino-acid sequenceUniProt
647 residues, UniProt reviewed canonical sequence.
>Q9UFC0|LRWD1
1 MGPLSARLLM QRGRPKSDRL GKIRSLDLSG LELLSEHLDP KLLCRLTQLQ ELDLSNNHLE
61 TLPDNLGLSH LRVLRCANNQ LGDVTALCQF PKLEELSLEG NPFLTVNDNL KVSFLLPTLR
121 KVNGKDASST YSQVENLNRE LTSRVTAHWE KFMATLGPEE EAEKAQADFV KSAVRDVRYG
181 PESLSEFTQW RVRMISEELV AASRTQVQKA NSPEKPPEAG AAHKPRARLA ALKRPDDVPL
241 SLSPSKRACA SPSAQVEGSP VAGSDGSQPA VKLEPLHFLQ CHSKNNSPQD LETQLWACAF
301 EPAWEEGATS QTVATCGGEA VCVIDCQTGI VLHKYKAPGE EFFSVAWTAL MVVTQAGHKK
361 RWSVLAAAGL RGLVRLLHVR AGFCCGVIRA HKKAIATLCF SPAHETHLFT ASYDKRIILW
421 DIGVPNQDYE FQASQLLTLD TTSIPLRLCP VASCPDARLL AGCEGGCCCW DVRLDQPQKR
481 RVCEVEFVFS EGSEASGRRV DGLAFVNEDI VASKGSGLGT ICLWSWRQTW GGRGSQSTVA
541 VVVLARLQWS STELAYFSLS ACPDKGIVLC GDEEGNVWLY DVSNILKQPP LLPAALQAPT
601 QILKWPQPWA LGQVVTKTMV NTVVANASFT YLTALTDSNI VAIWGRMLocalizationUniProt · AlphaFold · HPA
Whether an antibody against LRWD1 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.29
- Highest tissue expression
- 272 nTPM
Expression across tissuesHPA
Tissue
- testis: 272 nTPM
- cerebellum: 28 nTPM
- spleen: 24 nTPM
- pituitary gland: 17 nTPM
- adrenal gland: 17 nTPM
- small intestine: 17 nTPM
Single-cell type
- late primary spermatocytes: 1,786 nCPM
- early spermatids: 898 nCPM
- early primary spermatocytes: 172 nCPM
- late spermatids: 150 nCPM
- oocytes: 147 nCPM
- respiratory ciliated cells: 104 nCPM
Immune cell
- naive B-cell: 12 nTPM
- basophil: 11 nTPM
- NK-cell: 11 nTPM
- memory B-cell: 10 nTPM
- eosinophil: 9.9 nTPM
- gdT-cell: 9.7 nTPM
Brain region
- midbrain: 25 nTPM
- hippocampal formation: 21 nTPM
- medulla oblongata: 20 nTPM
- thalamus: 20 nTPM
- pons: 19 nTPM
- cerebral cortex: 18 nTPM
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 1.31
- gnomAD pLI
- 0
- gnomAD missense Z
- -0.23
- DepMap mean gene effect
- -0.08
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 11% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
Molecular functions
Cellular components
Protein domainsUniProt · Pfam · InterPro
- Leucine-rich repeat
- WD40 repeat
- Leucine-rich repeat, typical subtype
- WD40/YVTN repeat-like-containing domain superfamily
- WD40 repeat, conserved site
- Leucine-rich repeat domain superfamily
- WD40-repeat-containing domain superfamily
- Leucine-rich repeat and WD repeat-containing protein 1
- Leucine-rich repeat and WD repeat-containing protein 1, WD domain
- Leucine-rich repeat and WD repeat-containing protein 1, LRR domain
- Leucine-rich repeat and WD repeat-containing protein 1, LRR
- Leucine-rich repeat and WD repeat-containing protein 1, WD domain
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of LRWD1 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads LRWD1 as an antibody target. Whether an autoantibody or antibody against LRWD1 could matter depends on whether native LRWD1 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
LRWD1 is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label LRWD1 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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