SLC35B1
Solute carrier family 35 member B1
Also known as: AXER, S35B1_HUMAN, UGTREL1
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- P78383
- Gene
- SLC35B1
- Ensembl
- ENSG00000121073
- Chromosome
- 17
- Canonical length
- 322 aa
- Protein class
- Predicted intracellular proteins, Predicted membrane proteins, Transporters
- Subcellular location
- Endoplasmic reticulum,Vesicles
OverviewNCBI Gene
This gene encodes a nucleotide sugar transporter which is a member of solute carrier family 35. The transporters in this family are highly conserved hydrophobic proteins with multiple transmembrane domains. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]
Canonical amino-acid sequenceUniProt
322 residues, UniProt reviewed canonical sequence.
>P78383|SLC35B1
1 MASSSSLVPD RLRLPLCFLG VFVCYFYYGI LQEKITRGKY GEGAKQETFT FALTLVFIQC
61 VINAVFAKIL IQFFDTARVD RTRSWLYAAC SISYLGAMVS SNSALQFVNY PTQVLGKSCK
121 PIPVMLLGVT LLKKKYPLAK YLCVLLIVAG VALFMYKPKK VVGIEEHTVG YGELLLLLSL
181 TLDGLTGVSQ DHMRAHYQTG SNHMMLNINL WSTLLLGMGI LFTGELWEFL SFAERYPAII
241 YNILLFGLTS ALGQSFIFMT VVYFGPLTCS IITTTRKFFT ILASVILFAN PISPMQWVGT
301 VLVFLGLGLD AKFGKGAKKT SHLocalizationUniProt · AlphaFold · HPA
Whether an antibody against SLC35B1 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Other membrane
- Secreted
- No
- Transmembrane segments
- 10
- Mean surface accessibility (rSASA)
- 0.3
- Highest tissue expression
- 62 nTPM
Expression across tissuesHPA
Tissue
- skeletal muscle: 62 nTPM
- tongue: 56 nTPM
- epididymis: 50 nTPM
- liver: 43 nTPM
- choroid plexus: 35 nTPM
- thyroid gland: 34 nTPM
Single-cell type
- extravillous trophoblasts: 158 nCPM
- epididymal principal cells: 156 nCPM
- plasma cells: 139 nCPM
- enterocytes: 129 nCPM
- esophageal apical cells: 106 nCPM
- syncytiotrophoblasts: 94 nCPM
Immune cell
- plasmacytoid DC: 43 nTPM
- myeloid DC: 32 nTPM
- intermediate monocyte: 28 nTPM
- classical monocyte: 27 nTPM
- basophil: 25 nTPM
- non-classical monocyte: 19 nTPM
Brain region
- choroid plexus: 24 nTPM
- hypothalamus: 21 nTPM
- thalamus: 17 nTPM
- cerebral cortex: 17 nTPM
- midbrain: 16 nTPM
- medulla oblongata: 15 nTPM
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 1.02
- gnomAD pLI
- 0
- gnomAD missense Z
- 0.79
- DepMap mean gene effect
- -1.25
- DepMap dependency class
- common
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 8% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
Molecular functions
- ATP:ADP antiporter activity
- UDP-galactose transmembrane transporter activity
- UDP-glucose transmembrane transporter activity
Cellular components
Protein domainsUniProt · Pfam · InterPro
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of SLC35B1 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads SLC35B1 as an antibody target. Whether an autoantibody or antibody against SLC35B1 could matter depends on whether native SLC35B1 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
SLC35B1 is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label SLC35B1 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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