EVC
EvC complex member EVC
Also known as: DWF-1, EVC_HUMAN, EVC1
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- P57679
- Gene
- EVC
- Ensembl
- ENSG00000072840
- Chromosome
- 4
- Canonical length
- 992 aa
- Protein class
- Disease related genes, Human disease related genes, Predicted membrane proteins
- Subcellular location
- Nucleoplasm,Primary cilium transition zone,Basal body,Cytosol
OverviewNCBI Gene
This gene encodes a protein containing a leucine zipper and a transmembrane domain. This gene has been implicated in both Ellis-van Creveld syndrome (EvC) and Weyers acrodental dysostosis. [provided by RefSeq, Jul 2008]
Canonical amino-acid sequenceUniProt
992 residues, UniProt reviewed canonical sequence.
>P57679|EVC
1 MARGGAACKS DARLLLGRDA LRPAPALLAP AVLLGAALGL GLGLWLGCRA GRQRTRHQKD
61 DTQNLLKNLE SNAQTPSETG SPSRRRKREV QMSKDKEAVD ECEPPSNSNI TAFALKAKVI
121 YPINQKFRPL ADGSSNPSLH ENLKQAVLPH QPVEASPSSS LGSLSQGEKD DCSSSSSVHS
181 ATSDDRFLSR TFLRVNAFPE VLACESVDVD LCIYSLHLKD LLHLDTALRQ EKHMMFIQIF
241 KMCLLDLLPK KKSDDELYQK ILSKQEKDLE ELEKGLQVKL SNTEMSGAGD SEYITLADVE
301 KKEREYSEQL IDNMEAFWKQ MANIQHFLVD QFKCSSSKAR QLMMTLTERM IAAEGLLCDS
361 QELQALDALE RTMGRAHMAK VIEFLKLQVQ EETRCRLAAI SHGLELLAGE GKLSGRQKEE
421 LLTQQHKAFW QEAERFSREF VQRGKDLVTA SLAHQVEGTA KLTLAQEEEQ RSFLAEAQPT
481 ADPEKFLEAF HEVLERQRLM QCDLEEEENV RATEAVVALC QELYFSTVDT FQKFVDALFL
541 QTLPGMTGLP PEECDYLRQE VQENAAWQLG KSNRFRRQQW KLFQELLEQD QQVWMEECAL
601 SSVLQTHLRE DHEGTIRGVL GRLGGLTEES TRCVLQGHDL LLRSALRRLA LRGNALATLT
661 QMRLSGKKHL LQELREQRAL EQGSSQCLDE HQWQLLRALE ARVLEEASRL EEEAQQTRLQ
721 LQQRLLAEAQ EVGQLLQQHM ECAIGQALLV HARNAATKSR AKDRDDFKRT LMEAAVESVY
781 VTSAGVSRLV QAYYQQIGRI MEDHEERKLQ HLKTLQGERM ENYKLRKKQE LSNPSSGSRT
841 AGGAHETSQA VHQRMLSQQK RFLAQFPVHQ QMRLHAQQQQ AGVMDLLEAQ LETQLQEAEQ
901 NFISELAALA RVPLAESKLL PAKRGLLEKP LRTKRKKPLP QERGDLGVPN NEDLASGDQT
961 SGSLSSKRLS QQESEAGDSG NSKKMLKRRS NLLocalizationUniProt · AlphaFold · HPA
Whether an antibody against EVC can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Cell surface
- Secreted
- No
- Transmembrane segments
- 1
- Mean surface accessibility (rSASA)
- 0.4
- Highest tissue expression
- 24 nTPM
Expression across tissuesHPA
Tissue
- kidney: 24 nTPM
- ovary: 24 nTPM
- parathyroid gland: 18 nTPM
- gallbladder: 13 nTPM
- fallopian tube: 13 nTPM
- blood vessel: 13 nTPM
Single-cell type
- loop of henle epithelial cells: 217 nCPM
- proximal tubule cells: 163 nCPM
- myosatellite cells: 97 nCPM
- fibro-adipogenic progenitors: 73 nCPM
- distal convoluted tubule cells: 71 nCPM
- renal collecting duct intercalated cells: 60 nCPM
Immune cell
- basophil: 0.1 nTPM
- classical monocyte: 0 nTPM
- eosinophil: 0 nTPM
- gdT-cell: 0 nTPM
- intermediate monocyte: 0 nTPM
- MAIT T-cell: 0 nTPM
Brain region
- choroid plexus: 13 nTPM
- medulla oblongata: 11 nTPM
- thalamus: 9.3 nTPM
- midbrain: 8.5 nTPM
- spinal cord: 8.5 nTPM
- basal ganglia: 8.2 nTPM
DiseaseUniProt · ClinVar · IEDB · PubMed
Four sources answering four different questions about EVC.
Disease | AllUniProt
Conditions EVC is implicated in, by any mechanism.
- Ellis-van Creveld syndrome (EVC) MIM:225500
- Acrofacial dysostosis, Weyers type (WAD) MIM:193530
Disease | GeneticClinVar
320 pathogenic / likely-pathogenic of 2,103 ClinVar records.
Conditions with pathogenic or likely-pathogenic variants.
- Ellis-van Creveld syndrome
- Curry-Hall syndrome
- EVC-related disorder
- Short-rib thoracic dysplasia 6 with or without polydactyly
- EVC-associated disorder
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 1.06
- gnomAD pLI
- 0
- gnomAD missense Z
- -1.25
- DepMap mean gene effect
- 0.1
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 4% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- cartilage development
- endochondral bone growth
- muscle organ development
- positive regulation of smoothened signaling pathway
- skeletal system development
- smoothened signaling pathway
Cellular components
Protein domainsUniProt · Pfam · InterPro
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of EVC in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads EVC as an antibody target. Whether an autoantibody or antibody against EVC could matter depends on whether native EVC is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
EVC is annotated at the cell surface, where native EVC is exposed to circulating antibodies and is a prime autoantibody target that could block, deplete, or overstimulate it.
Annotation status
The present source text does not explicitly label EVC as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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