SFTPC
Surfactant protein C
Also known as: BRICD6, PSP-C, PSPC_HUMAN, SFTP2, SMDP2, SP-C
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- P11686
- Gene
- SFTPC
- Ensembl
- ENSG00000168484
- Chromosome
- 8
- Canonical length
- 197 aa
- Protein class
- Disease related genes, Human disease related genes, Predicted intracellular proteins, Predicted secreted proteins
- Secretome location
- Secreted in other tissues
OverviewNCBI Gene
This gene encodes the pulmonary-associated surfactant protein C (SPC), an extremely hydrophobic surfactant protein essential for lung function and homeostasis after birth. Pulmonary surfactant is a surface-active lipoprotein complex composed of 90% lipids and 10% proteins which include plasma proteins and apolipoproteins SPA, SPB, SPC and SPD. The surfactant is secreted by the alveolar cells of the lung and maintains the stability of pulmonary tissue by reducing the surface tension of fluids that coat the lung. Multiple mutations in this gene have been identified, which cause pulmonary surfactant metabolism dysfunction type 2, also called pulmonary alveolar proteinosis due to surfactant protein C deficiency, and are associated with interstitial lung disease in older infants, children, and adults. Alternatively spliced transcript variants encoding different protein isoforms have been identified.[provided by RefSeq, Feb 2010]
Canonical amino-acid sequenceUniProt
197 residues, UniProt reviewed canonical sequence.
>P11686|SFTPC
1 MDVGSKEVLM ESPPDYSAAP RGRFGIPCCP VHLKRLLIVV VVVVLIVVVI VGALLMGLHM
61 SQKHTEMVLE MSIGAPEAQQ RLALSEHLVT TATFSIGSTG LVVYDYQQLL IAYKPAPGTC
121 CYIMKIAPES IPSLEALTRK VHNFQMECSL QAKPAVPTSK LGQAEGRDAG SAPSGGDPAF
181 LGMAVSTLCG EVPLYYILocalizationUniProt · AlphaFold · HPA
Whether an antibody against SFTPC can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Secreted
- Secreted
- Yes
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.5
- Highest tissue expression
- 17,411 nTPM
Expression across tissuesHPA
Tissue
- lung: 17,411 nTPM
- adrenal gland: 22 nTPM
- ovary: 20 nTPM
- spinal cord: 16 nTPM
- spleen: 13 nTPM
- basal ganglia: 12 nTPM
Single-cell type
- alveolar cells type 2: 101,266 nCPM
- transitional alveolar cells: 15,492 nCPM
- alveolar cells type 1: 1,380 nCPM
- respiratory ionocytes: 658 nCPM
- submucosal glandular cells: 320 nCPM
- respiratory ciliated cells: 231 nCPM
Immune cell
- basophil: 0 nTPM
- classical monocyte: 0 nTPM
- eosinophil: 0 nTPM
- gdT-cell: 0 nTPM
- intermediate monocyte: 0 nTPM
- MAIT T-cell: 0 nTPM
Brain region
- white matter: 14 nTPM
- basal ganglia: 8.3 nTPM
- medulla oblongata: 8 nTPM
- cerebral cortex: 7.2 nTPM
- thalamus: 6.8 nTPM
- midbrain: 6.4 nTPM
DiseaseUniProt · ClinVar · IEDB · PubMed
Four sources answering four different questions about SFTPC.
Disease | AllUniProt
Conditions SFTPC is implicated in, by any mechanism.
- Pulmonary surfactant metabolism dysfunction 2 (SMDP2) MIM:610913
Disease | GeneticClinVar
29 pathogenic / likely-pathogenic of 206 ClinVar records.
Conditions with pathogenic or likely-pathogenic variants.
- Surfactant metabolism dysfunction, pulmonary, 2
- Hereditary pulmonary alveolar proteinosis
- SFTPC-related disorder
- Pulmonary fibrosis
- Inborn genetic diseases
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 1.25
- gnomAD pLI
- 0
- gnomAD missense Z
- 0.85
- DepMap mean gene effect
- 0.01
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 3% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
Molecular functions
Cellular components
Protein domainsUniProt · Pfam · InterPro
- BRICHOS domain
- BRICHOS domain
- Pulmonary surfactant-associated protein C
- Surfactant protein C, N-terminal propeptide
- Surfactant-associated polypeptide, palmitoylation site
- Surfactant protein C, N terminal propeptide
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of SFTPC in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads SFTPC as an antibody target. Whether an autoantibody or antibody against SFTPC could matter depends on whether native SFTPC is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
SFTPC is annotated as secreted, so native SFTPC circulates and is directly accessible to antibodies. Secreted and cell-surface proteins are the autoantibody targets most likely to act like drugs, blocking or depleting the native protein.
Annotation status
The present source text does not explicitly label SFTPC as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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