PPM1F
Protein phosphatase 1F
Also known as: CAMKP, CaMKPase, FEM-2, KIAA0015, POPX2, PPM1F_HUMAN
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- P49593
- Gene
- PPM1F
- Ensembl
- ENSG00000100034
- Chromosome
- 22
- Canonical length
- 454 aa
- Protein class
- Disease related genes, Enzymes, Plasma proteins, Potential drug targets, Predicted intracellular proteins
- Subcellular location
- Nucleoplasm,Plasma membrane
OverviewNCBI Gene
The protein encoded by this gene is a member of the PP2C family of Ser/Thr protein phosphatases. PP2C family members are known to be negative regulators of cell stress response pathways. This phosphatase can interact with Rho guanine nucleotide exchange factors (PIX), and thus block the effects of p21-activated kinase 1 (PAK), a protein kinase mediating biological effects downstream of Rho GTPases. Calcium/calmodulin-dependent protein kinase II gamma (CAMK2G/CAMK-II) is found to be one of the substrates of this phosphatase. The overexpression of this phosphatase or CAMK2G has been shown to mediate caspase-dependent apoptosis. An alternatively spliced transcript variant has been identified, but its full-length nature has not been determined. [provided by RefSeq, Jul 2008]
Canonical amino-acid sequenceUniProt
454 residues, UniProt reviewed canonical sequence.
>P49593|PPM1F
1 MSSGAPQKSS PMASGAEETP GFLDTLLQDF PALLNPEDPL PWKAPGTVLS QEEVEGELAE
61 LAMGFLGSRK APPPLAAALA HEAVSQLLQT DLSEFRKLPR EEEEEEEDDD EEEKAPVTLL
121 DAQSLAQSFF NRLWEVAGQW QKQVPLAARA SQRQWLVSIH AIRNTRRKME DRHVSLPSFN
181 QLFGLSDPVN RAYFAVFDGH GGVDAARYAA VHVHTNAARQ PELPTDPEGA LREAFRRTDQ
241 MFLRKAKRER LQSGTTGVCA LIAGATLHVA WLGDSQVILV QQGQVVKLME PHRPERQDEK
301 ARIEALGGFV SHMDCWRVNG TLAVSRAIGD VFQKPYVSGE ADAASRALTG SEDYLLLACD
361 GFFDVVPHQE VVGLVQSHLT RQQGSGLRVA EELVAAARER GSHDNITVMV VFLRDPQELL
421 EGGNQGEGDP QAEGRRQDLP SSLPEPETQA PPRSLocalizationUniProt · AlphaFold · HPA
Whether an antibody against PPM1F can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.3
- Highest tissue expression
- 34 nTPM
Expression across tissuesHPA
Tissue
- spleen: 34 nTPM
- bone marrow: 25 nTPM
- placenta: 25 nTPM
- lung: 25 nTPM
- adipose tissue: 23 nTPM
- esophagus: 21 nTPM
Single-cell type
- neutrophils: 221 nCPM
- monocytes: 81 nCPM
- lymphatic endothelial cells: 77 nCPM
- vascular endothelial cells: 66 nCPM
- megakaryocytes: 56 nCPM
- megakaryocyte progenitors: 54 nCPM
Immune cell
- neutrophil: 29 nTPM
- non-classical monocyte: 25 nTPM
- intermediate monocyte: 21 nTPM
- classical monocyte: 13 nTPM
- myeloid DC: 9 nTPM
- eosinophil: 5.9 nTPM
Brain region
- hypothalamus: 47 nTPM
- pons: 44 nTPM
- medulla oblongata: 42 nTPM
- midbrain: 42 nTPM
- spinal cord: 39 nTPM
- white matter: 38 nTPM
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.75
- gnomAD pLI
- 0
- gnomAD missense Z
- 1.31
- DepMap mean gene effect
- -0.04
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 5% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- apoptotic process
- cellular response to xenobiotic stimulus
- intracellular signal transduction
- negative regulation of cell-cell adhesion mediated by cadherin
- negative regulation of DNA-templated transcription
- negative regulation of protein transport
- positive regulation of cell migration
- positive regulation of cell-substrate adhesion
- positive regulation of chemotaxis
- positive regulation of epithelial cell migration
- positive regulation of focal adhesion assembly
- positive regulation of gene expression
- positive regulation of growth
- positive regulation of stress fiber assembly
- regulation of protein localization
- signal transduction
Molecular functions
- calmodulin-dependent protein phosphatase activity
- metal ion binding
- protein serine/threonine phosphatase activity
- protein tyrosine/serine/threonine phosphatase activity
Cellular components
Protein domainsUniProt · Pfam · InterPro
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of PPM1F in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads PPM1F as an antibody target. Whether an autoantibody or antibody against PPM1F could matter depends on whether native PPM1F is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
PPM1F is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label PPM1F as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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