KRT25
Keratin, type I cytoskeletal 25
Also known as: K1C25_HUMAN, KRT25A
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q7Z3Z0
- Gene
- KRT25
- Ensembl
- ENSG00000204897
- Chromosome
- 17
- Canonical length
- 450 aa
- Protein class
- Disease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins
- Subcellular location
- Vesicles
OverviewNCBI Gene
This gene encodes a member of the type I (acidic) keratin family, which belongs to the superfamily of intermediate filament (IF) proteins. Keratins are heteropolymeric structural proteins which form the intermediate filament. These filaments, along with actin microfilaments and microtubules, compose the cytoskeleton of epithelial cells. The type I keratin genes are clustered in a region of chromosome 17q12-q21. [provided by RefSeq, Jul 2009]
Canonical amino-acid sequenceUniProt
450 residues, UniProt reviewed canonical sequence.
>Q7Z3Z0|KRT25
1 MSLRLSSASR RSCPRPTTGS LRLYGGGTSF GTGNSCGISG IGSGFSSAFG GSSSGGNTGG
61 GNPCAGFTVN ERGLLSGNEK VTMQNLNDRL ASYLDSVHAL EEANADLEQK IKGWYEKFGP
121 GSCRGLDHDY SRYFPIIDDL KNQIIASTTS NANAVLQIDN ARLTADDFRL KYENELALHQ
181 SVEADVNGLR RVLDEITLCR TDLEIQYETL SEEMTYLKKN HKEEMQVLQC AAGGNVNVEM
241 NAAPGVDLTV LLNNMRAEYE ALAEQNRRDA EAWFNEKSAS LQQQISEDVG ATTSARNELT
301 EMKRTLQTLE IELQSLLATK HSLECSLTET ESNYCAQLAQ IQAQIGALEE QLHQVRTETE
361 GQKLEYEQLL DIKLHLEKEI ETYCLLIGGD DGACKSGGYK SKDYGSGNVG SQVKDPAKAI
421 VVKKVLEEVD QRSKILTTRL HSLEEKSQSNLocalizationUniProt · AlphaFold · HPA
Whether an antibody against KRT25 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Intracellular
- Secreted
- No
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.55
- Highest tissue expression
- 102 nTPM
Expression across tissuesHPA
Tissue
- skin: 102 nTPM
- breast: 2.5 nTPM
- adipose tissue: 2.3 nTPM
- salivary gland: 1.1 nTPM
- testis: 0.8 nTPM
- colon: 0.2 nTPM
Single-cell type
- late spermatids: 13 nCPM
- early spermatids: 12 nCPM
- undifferentiated spermatogonia: 3.9 nCPM
- schwann cells: 0.4 nCPM
- fibro-adipogenic progenitors: 0.3 nCPM
- basal keratinocytes: 0.2 nCPM
Immune cell
- basophil: 0 nTPM
- classical monocyte: 0 nTPM
- eosinophil: 0 nTPM
- gdT-cell: 0 nTPM
- intermediate monocyte: 0 nTPM
- MAIT T-cell: 0 nTPM
Brain region
- cerebellum: 0.1 nTPM
- amygdala: 0 nTPM
- basal ganglia: 0 nTPM
- cerebral cortex: 0 nTPM
- choroid plexus: 0 nTPM
- hippocampal formation: 0 nTPM
DiseaseUniProt · ClinVar · IEDB · PubMed
Four sources answering four different questions about KRT25.
Disease | AllUniProt
Conditions KRT25 is implicated in, by any mechanism.
- Woolly hair autosomal recessive 3 (ARWH3) MIM:616760
Disease | GeneticClinVar
2 pathogenic / likely-pathogenic of 117 ClinVar records.
Conditions with pathogenic or likely-pathogenic variants.
- Wooly hair, autosomal recessive 3
- Hypotrichosis 8
- Autosomal Recessive Hypotrichosis with Woolly Hair
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 1.1
- gnomAD pLI
- 0
- gnomAD missense Z
- 0.17
- DepMap mean gene effect
- -0.02
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 2% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- cytoskeleton organization
- epithelial cell differentiation
- hair cycle
- hair follicle morphogenesis
- intermediate filament organization
- morphogenesis of an epithelium
Molecular functions
Cellular components
Protein domainsUniProt · Pfam · InterPro
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of KRT25 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads KRT25 as an antibody target. Whether an autoantibody or antibody against KRT25 could matter depends on whether native KRT25 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
KRT25 is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.
Annotation status
The present source text does not explicitly label KRT25 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
Loading the interactive Seroatlas protein explorer...