CHIA
Acidic mammalian chitinase
Also known as: AMCase, CHIA_HUMAN, CHIT2, TSA1902
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q9BZP6
- Gene
- CHIA
- Ensembl
- ENSG00000134216
- Chromosome
- 1
- Canonical length
- 476 aa
- Protein class
- Enzymes, Metabolic proteins, Predicted intracellular proteins
- Secretome location
- Intracellular and membrane
OverviewNCBI Gene
The protein encoded by this gene degrades chitin, which is found in the cell wall of most fungi as well as in arthropods and some nematodes. The encoded protein can also stimulate interleukin 13 expression, and variations in this gene can lead to asthma susceptibility. Several transcript variants encoding a few different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]
Canonical amino-acid sequenceUniProt
476 residues, UniProt reviewed canonical sequence.
>Q9BZP6|CHIA
1 MTKLILLTGL VLILNLQLGS AYQLTCYFTN WAQYRPGLGR FMPDNIDPCL CTHLIYAFAG
61 RQNNEITTIE WNDVTLYQAF NGLKNKNSQL KTLLAIGGWN FGTAPFTAMV STPENRQTFI
121 TSVIKFLRQY EFDGLDFDWE YPGSRGSPPQ DKHLFTVLVQ EMREAFEQEA KQINKPRLMV
181 TAAVAAGISN IQSGYEIPQL SQYLDYIHVM TYDLHGSWEG YTGENSPLYK YPTDTGSNAY
241 LNVDYVMNYW KDNGAPAEKL IVGFPTYGHN FILSNPSNTG IGAPTSGAGP AGPYAKESGI
301 WAYYEICTFL KNGATQGWDA PQEVPYAYQG NVWVGYDNIK SFDIKAQWLK HNKFGGAMVW
361 AIDLDDFTGT FCNQGKFPLI STLKKALGLQ SASCTAPAQP IEPITAAPSG SGNGSGSSSS
421 GGSSGGSGFC AVRANGLYPV ANNRNAFWHC VNGVTYQQNC QAGLVFDTSC DCCNWALocalizationUniProt · AlphaFold · HPA
Whether an antibody against CHIA can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Secreted
- Secreted
- Yes
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.25
- Highest tissue expression
- 340 nTPM
Expression across tissuesHPA
Tissue
- stomach: 340 nTPM
- lung: 10 nTPM
- parathyroid gland: 1.9 nTPM
- pituitary gland: 1.8 nTPM
- esophagus: 1.3 nTPM
- endometrium: 0.5 nTPM
Single-cell type
- gastric chief cells: 740 nCPM
- parietal cells: 552 nCPM
- mucous neck cells: 19 nCPM
- late spermatids: 12 nCPM
- alveolar cells type 2: 10 nCPM
- transitional alveolar cells: 6.2 nCPM
Immune cell
- naive B-cell: 0.1 nTPM
- basophil: 0 nTPM
- classical monocyte: 0 nTPM
- eosinophil: 0 nTPM
- gdT-cell: 0 nTPM
- intermediate monocyte: 0 nTPM
Brain region
- cerebral cortex: 0.4 nTPM
- amygdala: 0.3 nTPM
- basal ganglia: 0.3 nTPM
- cerebellum: 0.3 nTPM
- hippocampal formation: 0.3 nTPM
- medulla oblongata: 0.3 nTPM
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 1.24
- gnomAD pLI
- 0
- gnomAD missense Z
- -0.45
- DepMap mean gene effect
- 0.02
- DepMap dependency class
- selective
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 2% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
- apoptotic process
- chitin catabolic process
- immune system process
- polysaccharide catabolic process
- polysaccharide digestion
- positive regulation of chemokine production
- production of molecular mediator involved in inflammatory response
- chitin metabolic process
Molecular functions
Cellular components
Protein domainsUniProt · Pfam · InterPro
- Glycoside hydrolase family 18, catalytic domain
- Glycosyl hydrolase family 18, active site
- Chitin binding domain
- Chitinase II/V-like, catalytic domain
- Glycoside hydrolase superfamily
- Chitinase insertion domain superfamily
- Chitin binding domain superfamily
- Glycosyl hydrolase family 18
- Glycosyl hydrolases family 18
- Chitin binding Peritrophin-A domain
KeywordsUniProt
InteractionsUniProt · HPA
Protein binding partners of CHIA in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads CHIA as an antibody target. Whether an autoantibody or antibody against CHIA could matter depends on whether native CHIA is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
CHIA is annotated as secreted, so native CHIA circulates and is directly accessible to antibodies. Secreted and cell-surface proteins are the autoantibody targets most likely to act like drugs, blocking or depleting the native protein.
Annotation status
The present source text does not explicitly label CHIA as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.
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