TINAGL1
Tubulointerstitial nephritis antigen-like
Also known as: ARG1, LCN7, LIECG3, P3ECSL, TINAGRP, TINAL_HUMAN
Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene
Protein identityUniProt · HPA
- UniProt accession
- Q9GZM7
- Gene
- TINAGL1
- Ensembl
- ENSG00000142910
- Chromosome
- 1
- Canonical length
- 467 aa
- Protein class
- Enzymes, Predicted intracellular proteins, Predicted secreted proteins
- Secretome location
- Secreted to extracellular matrix
OverviewNCBI Gene
The protein encoded by this gene is similar in sequence to tubulointerstitial nephritis antigen, a secreted glycoprotein that is recognized by antibodies in some types of immune-related tubulointerstitial nephritis. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2011]
Canonical amino-acid sequenceUniProt
467 residues, UniProt reviewed canonical sequence.
>Q9GZM7|TINAGL1
1 MWRCPLGLLL LLPLAGHLAL GAQQGRGRRE LAPGLHLRGI RDAGGRYCQE QDLCCRGRAD
61 DCALPYLGAI CYCDLFCNRT VSDCCPDFWD FCLGVPPPFP PIQGCMHGGR IYPVLGTYWD
121 NCNRCTCQEN RQWQCDQEPC LVDPDMIKAI NQGNYGWQAG NHSAFWGMTL DEGIRYRLGT
181 IRPSSSVMNM HEIYTVLNPG EVLPTAFEAS EKWPNLIHEP LDQGNCAGSW AFSTAAVASD
241 RVSIHSLGHM TPVLSPQNLL SCDTHQQQGC RGGRLDGAWW FLRRRGVVSD HCYPFSGRER
301 DEAGPAPPCM MHSRAMGRGK RQATAHCPNS YVNNNDIYQV TPVYRLGSND KEIMKELMEN
361 GPVQALMEVH EDFFLYKGGI YSHTPVSLGR PERYRRHGTH SVKITGWGEE TLPDGRTLKY
421 WTAANSWGPA WGERGHFRIV RGVNECDIES FVLGVWGRVG MEDMGHHLocalizationUniProt · AlphaFold · HPA
Whether an antibody against TINAGL1 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.
- Antibody reachability
- Secreted
- Secreted
- Yes
- Transmembrane segments
- 0
- Mean surface accessibility (rSASA)
- 0.31
- Highest tissue expression
- 306 nTPM
Expression across tissuesHPA
Tissue
- blood vessel: 306 nTPM
- heart muscle: 222 nTPM
- kidney: 178 nTPM
- placenta: 172 nTPM
- adipose tissue: 162 nTPM
- breast: 143 nTPM
Single-cell type
- syncytiotrophoblasts: 2,158 nCPM
- cytotrophoblasts: 1,417 nCPM
- migrating cytotrophoblasts: 1,096 nCPM
- vascular smooth muscle cells: 389 nCPM
- pericytes: 356 nCPM
- extravillous trophoblasts: 210 nCPM
Immune cell
- basophil: 2 nTPM
- neutrophil: 0.6 nTPM
- NK-cell: 0.4 nTPM
- gdT-cell: 0.2 nTPM
- naive B-cell: 0.2 nTPM
- naive CD4 T-cell: 0.2 nTPM
Brain region
- thalamus: 28 nTPM
- pons: 24 nTPM
- medulla oblongata: 23 nTPM
- amygdala: 22 nTPM
- midbrain: 20 nTPM
- hypothalamus: 20 nTPM
Genetic constraint and essentialitygnomAD · DepMap
Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.
- gnomAD LOEUF (loss-of-function intolerance)
- 0.64
- gnomAD pLI
- 0
- gnomAD missense Z
- 1.27
- DepMap mean gene effect
- -0.01
- DepMap dependency class
- none
Cancer expressionTCGA
Across TCGA tumor cohorts, this protein is over-expressed in roughly 4% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).
OntologyGO
Biological processes
Molecular functions
Cellular components
Protein domainsUniProt · Pfam · InterPro
KeywordsUniProt
Antibody and autoantibody relevanceSeroatlas analysis
Seroatlas reads TINAGL1 as an antibody target. Whether an autoantibody or antibody against TINAGL1 could matter depends on whether native TINAGL1 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.
TINAGL1 is annotated as secreted, so native TINAGL1 circulates and is directly accessible to antibodies. Secreted and cell-surface proteins are the autoantibody targets most likely to act like drugs, blocking or depleting the native protein.
Source-annotated serology context
The source annotations explicitly mention antibody, autoantibody, autoantigen, or autoimmune context. This is biological context, not study-specific reactivity.
- The protein encoded by this gene is similar in sequence to tubulointerstitial nephritis antigen, a secreted glycoprotein that is recognized by antibodies in some types of immune-related tubulointerstitial nephritis.
Loading the interactive Seroatlas protein explorer...