Seroatlas · Human Serome Atlas

PID1

PTB-containing, cubilin and LRP1-interacting protein

Also known as: FLJ20701, NYGGF4, PCLI1_HUMAN

Cross-references: UniProt · Ensembl · Human Protein Atlas · GeneCards · NCBI Gene

Protein identityUniProt · HPA

UniProt accession
Q7Z2X4
Gene
PID1
Ensembl
ENSG00000153823
Chromosome
2
Canonical length
250 aa
Protein class
Predicted intracellular proteins
Subcellular location
Endoplasmic reticulum

OverviewNCBI Gene

Involved in several processes, including negative regulation of ATP biosynthetic process; negative regulation of D-glucose import; and positive regulation of metabolic process. Located in cytoplasm. [provided by Alliance of Genome Resources, Jul 2025]

Canonical amino-acid sequenceUniProt

250 residues, UniProt reviewed canonical sequence.

>Q7Z2X4|PID1
     1  MFSLPLSLPL CEDTAFLPSK CCSSHKTIKQ ARTLIMIFLA SGTHFQTMLK SKLNVLTLKK
    61  EPLPAVIFHE PEAIELCTTT PLMKTRTHSG CKVTYLGKVS TTGMQFLSGC TEKPVIELWK
   121  KHTLAREDVF PANALLEIRP FQVWLHHLDH KGEATVHMDT FQVARIAYCT ADHNVSPNIF
   181  AWVYREINDD LSYQMDCHAV ECESKLEAKK LAHAMMEAFR KTFHSMKSDG RIHSNSSSEE
   241  VSQELESDDG

LocalizationUniProt · AlphaFold · HPA

Whether an antibody against PID1 can act on the native protein depends on physical access: surface and secreted proteins are reachable by circulating antibodies, intracellular proteins usually are not.

Antibody reachability
Intracellular
Secreted
No
Transmembrane segments
0
Mean surface accessibility (rSASA)
0.44
Highest tissue expression
91 nTPM

Expression across tissuesHPA

Tissue

  • blood vessel: 91 nTPM
  • liver: 58 nTPM
  • cerebral cortex: 37 nTPM
  • colon: 35 nTPM
  • urinary bladder: 32 nTPM
  • adipose tissue: 29 nTPM

Single-cell type

  • fibro-adipogenic progenitors: 1,154 nCPM
  • oligodendrocyte progenitor cells: 1,038 nCPM
  • cdc: 809 nCPM
  • fibroblasts: 698 nCPM
  • hepatocytes: 690 nCPM
  • leydig cells: 589 nCPM

Immune cell

  • myeloid DC: 84 nTPM
  • intermediate monocyte: 80 nTPM
  • classical monocyte: 71 nTPM
  • total PBMC: 28 nTPM
  • non-classical monocyte: 17 nTPM
  • neutrophil: 1.5 nTPM

Brain region

  • midbrain: 67 nTPM
  • thalamus: 47 nTPM
  • cerebral cortex: 45 nTPM
  • basal ganglia: 44 nTPM
  • amygdala: 40 nTPM
  • hypothalamus: 40 nTPM

DiseaseUniProt · ClinVar · IEDB · PubMed

Four sources answering four different questions about PID1.

Disease | GeneticClinVar

1 pathogenic / likely-pathogenic of 41 ClinVar records.

Conditions with pathogenic or likely-pathogenic variants.

Genetic constraint and essentialitygnomAD · DepMap

Does the body need this protein intact? Low LOEUF or a strong DepMap dependency means loss or blockade of the protein is likely to be felt.

gnomAD LOEUF (loss-of-function intolerance)
1.21
gnomAD pLI
0
gnomAD missense Z
0.27
DepMap mean gene effect
0.11
DepMap dependency class
none

Cancer expressionTCGA

Across TCGA tumor cohorts, this protein is over-expressed in roughly 4% of surveyed tumor types (aggregate summary; per-cohort expression, alteration, and survival load in the interactive view).

OntologyGO

Biological processes

Cellular components

Protein domainsUniProt · Pfam · InterPro

KeywordsUniProt

InteractionsUniProt · HPA

Protein binding partners of PID1 in the human serome: UniProt-annotated complex subunits plus reported interactors. Each links to its own Seroatlas record.

Antibody and autoantibody relevanceSeroatlas analysis

Seroatlas reads PID1 as an antibody target. Whether an autoantibody or antibody against PID1 could matter depends on whether native PID1 is physically reachable, whether the body needs it intact, and whether it acts in a disease-relevant tissue.

PID1 is annotated as predominantly intracellular. Intracellular proteins are common autoantibody markers, becoming visible to the immune system after cell injury or altered processing, but are usually markers of disease rather than direct drivers.

Annotation status

The present source text does not explicitly label PID1 as an autoantigen. Seroatlas presents hypothesis context only and does not manufacture a known-serology claim.

Canonical record: https://seroatlas.com/gene/PID1. Study-independent annotations aggregated from UniProt, Human Protein Atlas, PubMed, IEDB, Pfam, InterPro, Gene Ontology, AlphaFold, gnomAD, DepMap, ClinVar, TCGA. Catalog release seroatlas-reviewed-human-uniprot-20260313.

Seroatlas is the reference for exploring autoantibody and antibody serology at the human-protein level: the autoreactome and human serome, multiplex serology (HuProt, HuScan, VirScan, PhIP-Seq).

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